MirGeneDB 3.0
MirGeneDB ID

Mdo-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-196a
Paralogues Mdo-Mir-196-P1 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cja-Mir-196-P3  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Eca-Mir-196-P3  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mml-Mir-196-P3  Mmr-Mir-196-P3  Mmu-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(monDom5_add)		 2: 201215985-201216044 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGAGCGCGGAUGCGAACUGCUCAGUGGGUUAGGUAGUUUCCUGUUGUUGGGCCUAGAUUUCUAAACACAAGAACAUCAAACCACCUGAUUCACUGCAGUUACUGCUCCUCGGUCAGCGA
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Structure
        10            20        30        40        50         
CAGAGCGCGGAUGCGAA----|   UC            A    CC    G   GGCCUAGA 
                     CUGC  AGUGGGUUAGGU GUUU  UGUU UUG        U
                     GACG  UCACUUAGUCCA CAAA  ACAA AAC        U
AGCGACUGGCUCCUCGUCAUU^   --            C    CU    G   ACAAAUCU 
.       110       100          90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-196-P3_5p
mirBase accessionMIMAT0028494
Sequence 
0- UAGGUAGUUUCCUGUUGUUGGG -22
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Proposed targets TargetScanVert: mdo-miR-196a-5p
Star sequence

Mdo-Mir-196-P3_3p*
mirBase accessionMIMAT0028495
Sequence 
38- CAAGAACAUCAAACCACCUGAU -60
Get sequence
Proposed targets TargetScanVert: mdo-miR-196a-3p