Mir-196-P1

MirGeneDB ID

Mdo-Mir-196-P1

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Gray short-tailed opossum (Monodelphis domestica)

MiRBase ID

mdo-mir-196b

Paralogues

Mdo-Mir-196-P3

Orthologues

Aca-Mir-196-P1 Ami-Mir-196-P1 Bta-Mir-196-P1 Cfa-Mir-196-P1 Cin-Mir-196 Cli-Mir-196-P1 Cmi-Mir-196-P1 Cpi-Mir-196-P1 Cpo-Mir-196-P1 Dno-Mir-196-P1 Dre-Mir-196-P1a Dre-Mir-196-P1b Ete-Mir-196-P1 Gga-Mir-196-P1 Gja-Mir-196-P1 Gmo-Mir-196-P1a Gmo-Mir-196-P1b Hsa-Mir-196-P1 Lch-Mir-196-P1 Loc-Mir-196-P1 Mal-Mir-196-P1a Mal-Mir-196-P1b Mml-Mir-196-P1 Mmu-Mir-196-P1 Mun-Mir-196-P1 Oan-Mir-196-P1 Ocu-Mir-196-P1 Pbv-Mir-196-P1 Pma-Mir-196-o1 Rno-Mir-196-P1c Rno-Mir-196-P1d Sha-Mir-196-P1 Spt-Mir-196-P1 Sto-Mir-196-P1 Tgu-Mir-196-P1 Tni-Mir-196-P1a Tni-Mir-196-P1b Xla-Mir-196-P1e Xla-Mir-196-P1f Xtr-Mir-196-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(monDom5_add)

8: 297346810-297346868 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUGGGGGAGCAGCAGAACUGGUCUGUGAUUUAGGUAGUUUCCUGUUGUUGGGGCUCCACCUUUCUCUCGACAGCACGAUACUGCCUUCAUUACUUCAGUUGAAUUCGUCACCAGGUAUA

Get precursor sequence

Structure

        10            20        30        40        50         
UUGGGGGAGCAGCAGAA----|   UCU     UU       U  C          GCUCCA 
                     CUGG   GUGAU  AGGUAGU UC UGUUGUUGGG      \
                     GACU   CAUUA  UCCGUCA AG ACGACAGCUC      C
AUAUGGACCACUGCUUAAGUU^   U--     CU       U  C          UCUUUC 
       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Mdo-Mir-196-P1_5p

mirBase accession

MIMAT0004124

Sequence

0- UAGGUAGUUUCCUGUUGUUGGG -22

Get sequence

Proposed targets

TargetScanVert: mdo-miR-196b

Star sequence

Mdo-Mir-196-P1_3p* (predicted)

mirBase accession

None

Sequence

37- CGACAGCACGAUACUGCCUUCA -59

Get sequence