MirGeneDB 3.0

MirGeneDB ID

Pbv-Mir-196-P1

Family name MIR-196 (all species)
Seed AGGUAGU
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-196c
Paralogues Pbv-Mir-196-P3 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1a  Dre-Mir-196-P1b  Eca-Mir-196-P1  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1a  Gmo-Mir-196-P1b  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1a  Mal-Mir-196-P1b  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pma-Mir-196-o1  Rno-Mir-196-P1c  Rno-Mir-196-P1d  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1a  Tni-Mir-196-P1b  Xla-Mir-196-P1e  Xla-Mir-196-P1f  Xtr-Mir-196-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE953980.1: 281968-282028 [+]
Precursor
(pre-Mir +30nt flank)
AAUUAGAAAGCUGAGAACUGGUCGGUGAUUUAGGUAGUUUCUCGUUGUUGAGGCUGAACAUUUCUCUCUCUGCAGCACGAAACUGCCUUCAUCACUUCAGUUUAUAAUCAUCAGAUGGGUC
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Structure
        10            20        30        40        50          
AAUUAGAAAGCUGAGAA----|   UC      UU          UC     U   GCUGAAC 
                     CUGG  GGUGAU  AGGUAGUUUC  GUUGU GAG       \
                     GACU  UCACUA  UCCGUCAAAG  CGACG CUC       A
CUGGGUAGACUACUAAUAUUU^   --      CU          CA     U   UCUCUUU 
 .       110       100          90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Pbv-Mir-196-P1_5p

mirBase accessionMIMAT0038995
Sequence
0- UAGGUAGUUUCUCGUUGUUGAG -22
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Star sequence

Pbv-Mir-196-P1_3p* (predicted)

mirBase accessionNone
Sequence
39- CUGCAGCACGAAACUGCCUUCA -61
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