MirGeneDB 3.0
MirGeneDB ID

Sto-Mir-196-P1

Family name MIR-196 (all species)
Seed AGGUAGU
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-196-P3 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1a  Dre-Mir-196-P1b  Eca-Mir-196-P1  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1a  Gmo-Mir-196-P1b  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1a  Mal-Mir-196-P1b  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Rno-Mir-196-P1c  Rno-Mir-196-P1d  Sha-Mir-196-P1  Spt-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1a  Tni-Mir-196-P1b  Xla-Mir-196-P1e  Xla-Mir-196-P1f  Xtr-Mir-196-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCA_003427355_STO_add)		 BFAA01000097.1: 1251099-1251156 [-]
Precursor
(pre-Mir +30nt flank)
AAAGAGCAGAGAUAGAACUGAUGUGUGAUUUAGGUAGUUUCAUGUUGUUGGGGCUCAAGUCUAUCUCUACAACACGAAACUGCCUGAAUUACUGCAGUUAUCGUCUUCGCCAGUGAGU
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Structure
        10            20        30        40        50         
AAAGAGCAGAGAUAGAA----|  AUGU                 A      U   GCUCAA 
                     CUG    GUGAUUUAGGUAGUUUC UGUUGU GGG      \
                     GAC    CAUUAAGUCCGUCAAAG ACAACA UCU      G
UGAGUGACCGCUUCUGCUAUU^  GU--                 C      -   CUAUCU 
      110       100          90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Sto-Mir-196-P1_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Sto-Mir-196-P1_3p*
mirBase accessionNone
Sequence 
36- CUACAACACGAAACUGCCUGAA -58
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