MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-196-P1a

Family name MIR-196 (all species)
Seed AGGUAGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-196a-2
Paralogues Dre-Mir-196-P1b  Dre-Mir-196-P3a  Dre-Mir-196-P4a  Dre-Mir-196-P4b 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cja-Mir-196-P1  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Eca-Mir-196-P1  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Gmo-Mir-196-P1a  Hsa-Mir-196-P1  Laf-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1a  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmr-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Neu-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pab-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1a  Xtr-Mir-196-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(danRer11)		 chr19: 19747629-19747686 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGAAAAUUUGAACCAGACUGUCGAGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUUACAUUCAAACUCUGCAACGUGAAACUGUCUUAAUUGCCCCAGUUUCAUUCCUCUGUAUAACCU
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Structure
        10            20        30        40        50        
UGAAAAUUUGAACCAGA----|  UCGA UG   U  GU             U   AUUAC 
                     CUG    G  GUU AG  AGUUUCAUGUUGU GGG     A
                     GAC    C  UAA UC  UCAAAGUGCAACG CUC     U
UCCAAUAUGUCUCCUUACUUU^  CC-- GU   U  UG             U   AAACU 
      110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-196-P1a_5p
mirBase accessionMIMAT0001276
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGGA -23
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Proposed targets TargetScanFish: dre-miR-196a
Star sequence

Dre-Mir-196-P1a_3p*
mirBase accessionMIMAT0031983
Sequence 
35- UCUGCAACGUGAAACUGUCUUAA -58
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