MirGeneDB 2.1
MirGeneDB ID

Gmo-Mir-196-P1b

Family name MIR-196 (all species)
Seed AGGUAGU
Species Cod (Gadus morhua)
MiRBase ID
Paralogues Gmo-Mir-196-P1a  Gmo-Mir-196-P4a 
Orthologues Aca-Mir-196-P1  Ami-Mir-196-P1  Bta-Mir-196-P1  Cfa-Mir-196-P1  Cin-Mir-196  Cli-Mir-196-P1  Cmi-Mir-196-P1  Cpi-Mir-196-P1  Cpo-Mir-196-P1  Dno-Mir-196-P1  Dre-Mir-196-P1b  Ete-Mir-196-P1  Gga-Mir-196-P1  Gja-Mir-196-P1  Hsa-Mir-196-P1  Lch-Mir-196-P1  Loc-Mir-196-P1  Mal-Mir-196-P1b  Mdo-Mir-196-P1  Mml-Mir-196-P1  Mmu-Mir-196-P1  Mun-Mir-196-P1  Oan-Mir-196-P1  Ocu-Mir-196-P1  Pbv-Mir-196-P1  Pma-Mir-196-o1  Sha-Mir-196-P1  Spt-Mir-196-P1  Sto-Mir-196-P1  Tgu-Mir-196-P1  Tni-Mir-196-P1b  Xtr-Mir-196-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 contig689238: 4120-4178 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGAAGGAAAAGUGGGCUGUUGAGUGGUUUAGGUAGUGUCAUGUUGUUGGGCUUUUUCUUUUUCUCCCACAACACCAACCUGCAUUGAUUACCACAGUAAGACUCGUCGACGACACAA
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Structure
        10            20        30        40         50         
AUUGAAGGAAAAGUGGG----|   U A      UAG    U  CA-      U   CUUUUU 
                     CUGU G GUGGUU   GUAG GU   UGUUGU GGG      \
                     GACA C CAUUAG   CGUC CA   ACAACA CCU      C
AACACAGCAGCUGCUCAGAAU^   - -      UUA    -  ACC      C   CUUUUU 
       110       100          90         80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-196-P1b_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUGUCAUGUUGUUGGG -22
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Star sequence

Gmo-Mir-196-P1b_3p* (predicted)
mirBase accessionNone
Sequence 
37- CCACAACACCAACCUGCAUUGA -59
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