MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-196-P1  Gja-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cja-Mir-196-P3  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Eca-Mir-196-P3  Gga-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Loc-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmr-Mir-196-P3  Mmu-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015168072.1: 216886-216946 [+]
Precursor
(pre-Mir +30nt flank)
GCAGGAGCGAACCAGAACUGCUUGGUGAAUUAGGUAGUUUCACGUUGUUGGGCCUUGGUUUGGAACACGCAAGAACAUCAAACUACCUGAUUUACUUACAGUUGACUCGACUUGGGGGGUG
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Structure
        10           20        30        40        50          
GCAGGAGCGAACCAGAA---|  CUU                 CAC   G   GGCCUUGGU 
                    CUG   GGUGAAUUAGGUAGUUU   GUU UUG         \
                    GAC   UCAUUUAGUCCAUCAAA   CAA AAC         U
GUGGGGGGUUCAGCUCAGUU^  AU-                 CUA   G   GCACAAGGU 
 .       110       100         90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Gja-Mir-196-P3_5p (predicted)
mirBase accessionNone
Sequence 
0- UAGGUAGUUUCACGUUGUUGGG -22
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Star sequence

Gja-Mir-196-P3_3p* (predicted)
mirBase accessionNone
Sequence 
38- GCAAGAACAUCAAACUACCUGAU -61
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