MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-196-P3

Family name MIR-196 (all species)
Seed AGGUAGU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-196-P1  Loc-Mir-196-P4 
Orthologues Aca-Mir-196-P3  Ami-Mir-196-P3  Bta-Mir-196-P3  Cfa-Mir-196-P3  Cin-Mir-196  Cja-Mir-196-P3  Cli-Mir-196-P3  Cmi-Mir-196-P3  Cpi-Mir-196-P3  Cpo-Mir-196-P3  Dno-Mir-196-P3  Dre-Mir-196-P3a  Eca-Mir-196-P3  Gga-Mir-196-P3  Gja-Mir-196-P3  Hsa-Mir-196-P3  Laf-Mir-196-P3  Lch-Mir-196-P3  Mal-Mir-196-P3a  Mdo-Mir-196-P3  Mml-Mir-196-P3  Mmr-Mir-196-P3  Mmu-Mir-196-P3  Neu-Mir-196-P3  Ocu-Mir-196-P3  Pab-Mir-196-P3  Pbv-Mir-196-P3  Pma-Mir-196-o3  Rno-Mir-196-P3  Sha-Mir-196-P3  Spt-Mir-196-P3  Sto-Mir-196-P3  Tni-Mir-196-P3a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LepOcu1)		 LG15: 9244730-9244790 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACCCGAGGAGAGCCGAACUGCUGUGUGAUUUAGGUAGUUUCAUGUUGUUGGGCUGCAAGUUUAUAAUCACAGGAACCUGAAACUGCCUGAAUUACUCCAGUUAUUUAACGCCGAACCUUCU
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Structure
        10         20         30        40        50          
ACCCGAGGAGAGCCGAACU-    U-                  U   G   -| CUGCAA 
                    GCUG  GUGAUUUAGGUAGUUUCA GUU UUG GG      G
                    UGAC  CAUUAAGUCCGUCAAAGU CAA GAC CU      U
UCUUCCAAGCCGCAAUUUAU    CU                  C   G   A^ AAUAUU 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThere are Dicer cuts +1 and +2 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-196-P3_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Loc-Mir-196-P3_3p*
mirBase accessionNone
Sequence 
39- CAGGAACCUGAAACUGCCUGAA -61
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