MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-196-P4

Family name MIR-196 (all species)
Seed AGGUAGU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-196-P1  Loc-Mir-196-P3 
Orthologues Aca-Mir-196-P4  Ami-Mir-196-P4  Bta-Mir-196-P4  Cfa-Mir-196-P4  Cin-Mir-196  Cja-Mir-196-P4  Cli-Mir-196-P4  Cmi-Mir-196-P4  Cpi-Mir-196-P4  Cpo-Mir-196-P4  Dno-Mir-196-P4  Dre-Mir-196-P4a  Dre-Mir-196-P4b  Eca-Mir-196-P4  Ete-Mir-196-P4  Gga-Mir-196-P4  Gja-Mir-196-P4  Gmo-Mir-196-P4a  Hsa-Mir-196-P4  Laf-Mir-196-P4  Lch-Mir-196-P4  Mal-Mir-196-P4a  Mml-Mir-196-P4  Mmr-Mir-196-P4  Mmu-Mir-196-P4  Mun-Mir-196-P4  Neu-Mir-196-P4  Oan-Mir-196-P4  Ocu-Mir-196-P4  Pab-Mir-196-P4  Rno-Mir-196-P4  Sha-Mir-196-P4  Spt-Mir-196-P4  Tgu-Mir-196-P4  Tni-Mir-196-P4a1  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3  Xla-Mir-196-P4c-v1  Xla-Mir-196-P4c-v2  Xla-Mir-196-P4d-v1  Xla-Mir-196-P4d-v2  Xtr-Mir-196-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Olfactores
Genome context
(LepOcu1)
Precursor
(pre-Mir +30nt flank)
UAGGUAGUUUCAUGUUGUUGGGAUUGACUUCCUGGCUCGGCAACAAGAAACUGCCUUGA
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Structure
          10        20         
U--|         A          AUUGAC 
   AGGUAGUUUC UGUUGUUGGG      \
   UCCGUCAAAG ACAACGGCUC      U
AGU^         A          GGUCCU 
        50        40        30
Deep sequencing
CommentThe precursor sequence is incomplete at the 5' end and is thus taken from the unique 5p read.
3' NTU No
MotifsNo
Mature sequence

Loc-Mir-196-P4_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGGA -23
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Star sequence

Loc-Mir-196-P4_3p*
mirBase accessionNone
Sequence 
36- UCGGCAACAAGAAACUGCCUUGA -59
Get sequence