MirGeneDB ID | Loc-Mir-196-P4 |
---|---|
Family name | MIR-196 (all species) |
Seed | AGGUAGU |
Species | Spotted gar (Lepisosteus oculatus) |
MiRBase ID | |
Paralogues | Loc-Mir-196-P1 Loc-Mir-196-P3 |
Orthologues | Aca-Mir-196-P4 Ami-Mir-196-P4 Bta-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Dre-Mir-196-P4a Dre-Mir-196-P4b Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Gmo-Mir-196-P4a Hsa-Mir-196-P4 Lch-Mir-196-P4 Mal-Mir-196-P4a Mml-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 Xla-Mir-196-P4c-v1 Xla-Mir-196-P4c-v2 Xla-Mir-196-P4d-v1 Xla-Mir-196-P4d-v2 Xtr-Mir-196-P4 |
Node of Origin (locus) | Gnathostomata |
Node of Origin (family) | Olfactores |
Genome context (LepOcu1) |
|
Precursor (pre-Mir +30nt flank) | UAGGUAGUUUCAUGUUGUUGGGAUUGACUUCCUGGCUCGGCAACAAGAAACUGCCUUGAGet precursor sequence |
Structure | 10 20 U--| A AUUGAC AGGUAGUUUC UGUUGUUGGG \ UCCGUCAAAG ACAACGGCUC U AGU^ A GGUCCU 50 40 30 |
Deep sequencing | |
Comment | The precursor sequence is incomplete at the 5' end and is thus taken from the unique 5p read. |
3' NTU | No |
Motifs | No |
Mature sequence | Loc-Mir-196-P4_5p |
mirBase accession | None |
Sequence |
0- UAGGUAGUUUCAUGUUGUUGGGA -23
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|
Star sequence | Loc-Mir-196-P4_3p* |
mirBase accession | None |
Sequence |
36- UCGGCAACAAGAAACUGCCUUGA -59
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