Mir-196-P4

MirGeneDB ID

Cmi-Mir-196-P4

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-196-P1 Cmi-Mir-196-P3

Orthologues

Aca-Mir-196-P4 Ami-Mir-196-P4 Bta-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cja-Mir-196-P4 Cli-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Dre-Mir-196-P4a Dre-Mir-196-P4b Eca-Mir-196-P4 Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Gmo-Mir-196-P4a Hsa-Mir-196-P4 Laf-Mir-196-P4 Lch-Mir-196-P4 Loc-Mir-196-P4 Mal-Mir-196-P4a Mml-Mir-196-P4 Mmr-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Neu-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Pab-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 Xla-Mir-196-P4c-v1 Xla-Mir-196-P4c-v2 Xla-Mir-196-P4d-v1 Xla-Mir-196-P4d-v2 Xtr-Mir-196-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636119.1: 230953-231010 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCGCCUGUUUUGUCCAACUGAUGUGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUCGGGUUUAAACUCGACAACAAGAAACUGCCUUAAUUACGUCAGUUCGUUUUCAUCAAGGGCAAG

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Structure

        10            20        30        40        50        
GCGCCUGUUUUGUCCAA----|       UG   U          A          AUCGG 
                     CUGAUGUG  GUU AGGUAGUUUC UGUUGUUGGG     G
                     GACUGCAU  UAA UCCGUCAAAG ACAACAGCUC     U
GAACGGGAACUACUUUUGCUU^       --   U          A          AAAUU 
      110       100        90          80        70        60

Deep sequencing

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Comment

There is a second Dicer cut +1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-196-P4_5p

mirBase accession

None

Sequence

0- UAGGUAGUUUCAUGUUGUUGGG -22

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Star sequence

Cmi-Mir-196-P4_3p*

mirBase accession

None

Sequence

36- CGACAACAAGAAACUGCCUUAA -58

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