Mir-196-P4a

MirGeneDB ID

Mal-Mir-196-P4a

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-196-P1a Mal-Mir-196-P1b Mal-Mir-196-P3a

Orthologues

Aca-Mir-196-P4 Ami-Mir-196-P4 Bta-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cja-Mir-196-P4 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Dre-Mir-196-P4a Eca-Mir-196-P4 Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Gmo-Mir-196-P4a Hsa-Mir-196-P4 Laf-Mir-196-P4 Lch-Mir-196-P4 Loc-Mir-196-P4 Mml-Mir-196-P4 Mmr-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Neu-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Pab-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 Xtr-Mir-196-P4

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Olfactores

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884694.1: 1840009-1840067 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCGCCUUUUGCGCGAAGCUGAAGCGUGGUUUAGGUAGUUUCAUGUUGUUGGGGUUGGCUUCCUGGCUCGGCAACAAGAAACUGCCUUGAUUACGUCAGUUCGUUUUCAUCAAGGGCACA

Get precursor sequence

Structure

        10            20        30        40        50         
CCGCCUUUUGCGCGAAG----|  AA        U          A          GUUGGC 
                     CUG  GCGUGGUU AGGUAGUUUC UGUUGUUGGG      \
                     GAC  UGCAUUAG UCCGUCAAAG ACAACGGCUC      U
ACACGGGAACUACUUUUGCUU^  --        U          A          GGUCCU 
       110       100          90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-196-P4a_5p

mirBase accession

None

Sequence

0- UAGGUAGUUUCAUGUUGUUGGG -22

Get sequence

Star sequence

Mal-Mir-196-P4a_3p* (predicted)

mirBase accession

None

Sequence

37- CGGCAACAAGAAACUGCCUUGA -59

Get sequence