MirGeneDB 2.1
MirGeneDB ID

Mal-Mir-196-P4a

Family name MIR-196 (all species)
Seed AGGUAGU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-196-P1a  Mal-Mir-196-P1b  Mal-Mir-196-P3a 
Orthologues Aca-Mir-196-P4  Ami-Mir-196-P4  Bta-Mir-196-P4  Cfa-Mir-196-P4  Cin-Mir-196  Cli-Mir-196-P4  Cmi-Mir-196-P4  Cpi-Mir-196-P4  Cpo-Mir-196-P4  Dno-Mir-196-P4  Dre-Mir-196-P4a  Ete-Mir-196-P4  Gga-Mir-196-P4  Gja-Mir-196-P4  Gmo-Mir-196-P4a  Hsa-Mir-196-P4  Lch-Mir-196-P4  Loc-Mir-196-P4  Mml-Mir-196-P4  Mmu-Mir-196-P4  Mun-Mir-196-P4  Oan-Mir-196-P4  Ocu-Mir-196-P4  Rno-Mir-196-P4  Sha-Mir-196-P4  Spt-Mir-196-P4  Tgu-Mir-196-P4  Tni-Mir-196-P4a1  Tni-Mir-196-P4a2  Tni-Mir-196-P4a3  Xtr-Mir-196-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Olfactores
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884694.1: 1840009-1840067 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCCUUUUGCGCGAAGCUGAAGCGUGGUUUAGGUAGUUUCAUGUUGUUGGGGUUGGCUUCCUGGCUCGGCAACAAGAAACUGCCUUGAUUACGUCAGUUCGUUUUCAUCAAGGGCACA
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Structure
        10            20        30        40        50         
CCGCCUUUUGCGCGAAG----|  AA        U          A          GUUGGC 
                     CUG  GCGUGGUU AGGUAGUUUC UGUUGUUGGG      \
                     GAC  UGCAUUAG UCCGUCAAAG ACAACGGCUC      U
ACACGGGAACUACUUUUGCUU^  --        U          A          GGUCCU 
       110       100          90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-196-P4a_5p
mirBase accessionNone
Sequence 
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Mal-Mir-196-P4a_3p* (predicted)
mirBase accessionNone
Sequence 
37- CGGCAACAAGAAACUGCCUUGA -59
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