Mir-196-P4

MirGeneDB ID

Cpo-Mir-196-P4

Family name

MIR-196 (all species)

Seed

AGGUAGU

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-196c

Paralogues

Cpo-Mir-196-P1 Cpo-Mir-196-P3

Orthologues

Aca-Mir-196-P4 Ami-Mir-196-P4 Bta-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Dno-Mir-196-P4 Dre-Mir-196-P4a Dre-Mir-196-P4b Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Gmo-Mir-196-P4a Hsa-Mir-196-P4 Lch-Mir-196-P4 Loc-Mir-196-P4 Mal-Mir-196-P4a Mml-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Tni-Mir-196-P4a1 Tni-Mir-196-P4a2 Tni-Mir-196-P4a3 Xla-Mir-196-P4c-v1 Xla-Mir-196-P4c-v2 Xla-Mir-196-P4d-v1 Xla-Mir-196-P4d-v2 Xtr-Mir-196-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Olfactores

Genome context
(cavPor3)

scaffold_9: 45819379-45819437 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-196-P4)

Mir-615 scaffold_9: 45777680-45777743 [-] UCSC
Mir-196-P4 scaffold_9: 45819379-45819437 [-] UCSC

Precursor
(pre-Mir +30nt flank)

CCGCCCUGUUCUCUCAGCUGAUCUGUGGCUUAGGUAGUUUCAUGUUGUUGGGAUUGAGUUUUGAACUCGGCAACAAGAAACUGCCUGAGUUACAUCAGUCGGUUUUCGUCGAGGGCCCU

Get precursor sequence

Structure

        10            20        30        40        50         
CCGCCCUGUUCUCUCAG----|   UC                  A          AUUGAG 
                     CUGA  UGUGGCUUAGGUAGUUUC UGUUGUUGGG      \
                     GACU  ACAUUGAGUCCGUCAAAG ACAACGGCUC      U
UCCCGGGAGCUGCUUUUGGCU^   --                  A          AAGUUU 
       110       100          90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Cpo-Mir-196-P4_5p

mirBase accession

MIMAT0047080

Sequence

0- UAGGUAGUUUCAUGUUGUUGGGA -23

Get sequence

Star sequence

Cpo-Mir-196-P4_3p*

mirBase accession

MIMAT0047081

Sequence

36- UCGGCAACAAGAAACUGCCUGAG -59

Get sequence