Mir-196-P4d-v2

MirGeneDB ID

Xla-Mir-196-P4d-v2

Family name

MIR-196 (all species)

Seed

GGUAGUU

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-196-P1e Xla-Mir-196-P1f Xla-Mir-196-P4c-v1 Xla-Mir-196-P4c-v2 Xla-Mir-196-P4d-v1

Orthologues

Aca-Mir-196-P4 Ami-Mir-196-P4 Bta-Mir-196-P4 Cfa-Mir-196-P4 Cin-Mir-196 Cja-Mir-196-P4 Cli-Mir-196-P4 Cmi-Mir-196-P4 Cpi-Mir-196-P4 Cpo-Mir-196-P4 Dno-Mir-196-P4 Eca-Mir-196-P4 Ete-Mir-196-P4 Gga-Mir-196-P4 Gja-Mir-196-P4 Hsa-Mir-196-P4 Laf-Mir-196-P4 Lch-Mir-196-P4 Loc-Mir-196-P4 Mml-Mir-196-P4 Mmr-Mir-196-P4 Mmu-Mir-196-P4 Mun-Mir-196-P4 Neu-Mir-196-P4 Oan-Mir-196-P4 Ocu-Mir-196-P4 Pab-Mir-196-P4 Rno-Mir-196-P4 Sha-Mir-196-P4 Spt-Mir-196-P4 Tgu-Mir-196-P4 Xtr-Mir-196-P4

Node of Origin (locus)

X. laevis

Node of Origin (family)

Olfactores

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 128789653-128789712 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAUCUUUGUAUCCAGCUGAUCUGUGGUUUAGGUAGUUUCAUGUUGUUGGGAUUGCUAAUUUCUUAACGCGGCAACAAGAAACUGCCUUAAUUACGUCAGUUCGUCUUCAUCAAGUGCAA

Get precursor sequence

Structure

        10            20        30        40        50         
GCAUCUUUGUAUCCAGC----|   CU      U          A        GGAUUGCUA 
                     UGAU  GUGGUU AGGUAGUUUC UGUUGUUG         A
                     ACUG  CAUUAA UCCGUCAAAG ACAACGGC         U
AACGUGAACUACUUCUGCUUG^   --      U          A        GCAAUUCUU 
.       110       100          90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Mature sequence

Xla-Mir-196-P4d-v2_5p

mirBase accession

None

Sequence

0- AGGUAGUUUCAUGUUGUUGGGA -22

Get sequence

Star sequence

Xla-Mir-196-P4d-v2_3p* (predicted)

mirBase accession

None

Sequence

38- GCGGCAACAAGAAACUGCCUUA -60

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