MirGeneDB 3.0

MirGeneDB ID

Pma-Mir-196-o2

Family name MIR-196 (all species)
Seed AGGUAGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-196-o1  Pma-Mir-196-o3 
Orthologues Cin-Mir-196 
Node of Origin (locus) P. marinus
Node of Origin (family) Olfactores
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046070.1: 1095082-1095141 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCAGACCGACACAACGACUGCUCGUGGUGUAGGUAGUUUCAUGUUGUUGGGAAUGUGUCCAAAUACUCGACAGCAGGAAACUGCCCGCACUACGUCAGUCGCCGCAGCUCCAGGGCAGG
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Structure
        10           20        30        40        50         
CGCAGACCGACACAACG---|   CU       UA         A          AAUGUG 
                    ACUG  CGUGGUG  GGUAGUUUC UGUUGUUGGG      U
                    UGAC  GCAUCAC  CCGUCAAAG ACGACAGCUC      C
GGACGGGACCUCGACGCCGC^   U-       GC         G          AUAAAC 
.       110       100         90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-196-o2_5p

mirBase accessionNone
Sequence
0- UAGGUAGUUUCAUGUUGUUGGG -22
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Star sequence

Pma-Mir-196-o2_3p* (predicted)

mirBase accessionNone
Sequence
38- CGACAGCAGGAAACUGCCCGCA -60
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