MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-10-P3d2

Family name MIR-10 (all species)
Seed CCCUGAG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-125b-2
Paralogues Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b1-v2  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1b2-v2  Dre-Mir-10-P1c1-v1  Dre-Mir-10-P1c1-v2  Dre-Mir-10-P1c2-v1  Dre-Mir-10-P1c2-v2  Dre-Mir-10-P1d1-v1  Dre-Mir-10-P1d1-v2  Dre-Mir-10-P2c1  Dre-Mir-10-P2c2  Dre-Mir-10-P2d1  Dre-Mir-10-P2d2  Dre-Mir-10-P3b1  Dre-Mir-10-P3b2  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Dre-Mir-10-P3d1 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3d  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Ami-Mir-10-P3d  Asp-Mir-10  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3d  Cfa-Mir-10-P3d  Cin-Mir-10-P3  Cja-Mir-10-P3d  Cli-Mir-10-P3d  Cmi-Mir-10-P3d  Cpi-Mir-10-P3d  Cpo-Mir-10-P3d  Cte-Mir-10-P3  Dan-Mir-10-P3  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3d  Dpu-Mir-10-P3  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Eca-Mir-10-P3d  Egr-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3d  Gga-Mir-10-P3d  Gja-Mir-10-P3d  Gmo-Mir-10-P3d2  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Hsa-Mir-10-P3d  Isc-Mir-10-P3  Laf-Mir-10-P3d  Lan-Mir-10-P3  Lch-Mir-10-P3d  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Loc-Mir-10-P3d  Mal-Mir-10-P3d2  Mdo-Mir-10-P3d  Mgi-Mir-10-P3  Mml-Mir-10-P3d  Mmr-Mir-10-P3d  Mmu-Mir-10-P3d  Mom-Mir-10-P3  Mun-Mir-10-P3d  Nag-Mir-10-P3-v1  Nag-Mir-10-P3-v2  Neu-Mir-10-P3d  Nve-Mir-10  Oan-Mir-10-P3d  Obi-Mir-10-P3  Ocu-Mir-10-P3d  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pab-Mir-10-P3d  Pau-Mir-10-P3  Pbv-Mir-10-P3d  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Ple-Mir-10-P3  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rno-Mir-10-P3d  Rph-Mir-10-P3  Sha-Mir-10-P3d  Sko-Mir-10-P3  Snu-Mir-10-P3  Spt-Mir-10-P3d  Spu-Mir-10-P3  Sto-Mir-10-P3d  Tca-Mir-10-P3  Tgu-Mir-10-P3d  Tni-Mir-10-P3d2  War-Mir-10-P3  Xbo-Mir-10-P3  Xtr-Mir-10-P3d 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Eumetazoa
Genome context
(danRer11)		 chr5: 29998775-29998836 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3d2)		 Mir-10-P2d2 chr5: 29990157-29990213 [+] UCSC Ensembl
Let-7-P1d2 chr5: 29990466-29990532 [+] UCSC Ensembl
Mir-10-P3d2 chr5: 29998775-29998836 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUCUCGGUGCUUCACCGUGCCCCUCUCCUUCCCUGAGACCCUAACUUGUGACGUUCUGCUUCGAUGUCCACGGGUUGGGUUCUCGGGAGCUGUGAGAGGCACUCAGUCGUCCACCCAUCCA
Get precursor sequence
Structure
        10          20         30        40        50        60
ACUCUCGGUGCUUCACC--     C   UCC-|    U    C           ACGUUCUG 
                   GUGCC CUC    UUCCC GAGA CCUAACUUGUG        C
                   CACGG GAG    GAGGG CUCU GGGUUGGGCAC        U
ACCUACCCACCUGCUGACU     A   UGUC^    -    U           CUGUAGCU 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-10-P3d2_5p
mirBase accessionMIMAT0001821
Sequence 
0- UCCCUGAGACCCUAACUUGUGA -22
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Proposed targets TargetScanFish: dre-miR-125b
Star sequence

Dre-Mir-10-P3d2_3p*
mirBase accessionMIMAT0031964
Sequence 
40- ACGGGUUGGGUUCUCGGGAGCU -62
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