MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-10-P3d

Family name MIR-10 (all species)
Seed CCCUGAG
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-125b-1
Paralogues Rno-Mir-10-P1b-v1  Rno-Mir-10-P1b-v2  Rno-Mir-10-P1c-v1  Rno-Mir-10-P1c-v2  Rno-Mir-10-P2b  Rno-Mir-10-P2c  Rno-Mir-10-P2d  Rno-Mir-10-P3b  Rno-Mir-10-P3c 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3d  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Ami-Mir-10-P3d  Asp-Mir-10  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3d  Cfa-Mir-10-P3d  Cin-Mir-10-P3  Cja-Mir-10-P3d  Cli-Mir-10-P3d  Cmi-Mir-10-P3d  Cpi-Mir-10-P3d  Cpo-Mir-10-P3d  Cte-Mir-10-P3  Dan-Mir-10-P3  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3d  Dpu-Mir-10-P3  Dre-Mir-10-P3d1  Dre-Mir-10-P3d2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Eca-Mir-10-P3d  Egr-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3d  Gga-Mir-10-P3d  Gja-Mir-10-P3d  Gmo-Mir-10-P3d1  Gmo-Mir-10-P3d2  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Hsa-Mir-10-P3d  Isc-Mir-10-P3  Laf-Mir-10-P3d  Lan-Mir-10-P3  Lch-Mir-10-P3d  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Loc-Mir-10-P3d  Mal-Mir-10-P3d1  Mal-Mir-10-P3d2  Mdo-Mir-10-P3d  Mgi-Mir-10-P3  Mml-Mir-10-P3d  Mmr-Mir-10-P3d  Mmu-Mir-10-P3d  Mom-Mir-10-P3  Mun-Mir-10-P3d  Nag-Mir-10-P3-v1  Nag-Mir-10-P3-v2  Neu-Mir-10-P3d  Nve-Mir-10  Oan-Mir-10-P3d  Obi-Mir-10-P3  Ocu-Mir-10-P3d  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pab-Mir-10-P3d  Pau-Mir-10-P3  Pbv-Mir-10-P3d  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Ple-Mir-10-P3  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rph-Mir-10-P3  Sha-Mir-10-P3d  Sko-Mir-10-P3  Snu-Mir-10-P3  Spt-Mir-10-P3d  Spu-Mir-10-P3  Sto-Mir-10-P3d  Tca-Mir-10-P3  Tgu-Mir-10-P3d  Tni-Mir-10-P3d1  Tni-Mir-10-P3d2  War-Mir-10-P3  Xbo-Mir-10-P3  Xla-Mir-10-P3d3  Xla-Mir-10-P3d4  Xtr-Mir-10-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(rn6)		 chr8: 45798274-45798335 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P3d)		 Let-7-P1d chr8: 45753280-45753346 [+] UCSC Ensembl
Mir-10-P3d chr8: 45798274-45798335 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGGAAGAAUUGUGUUGCGCUCCCCUCAGUCCCUGAGACCCUAACUUGUGAUGUUUACCGUUUAAAUCCACGGGUUAGGCUCUUGGGAGCUGCGAGUCGUGCCUUUGCAUCGCUGAAGGAA
Get precursor sequence
Structure
        10            20         30        40        50        60
AAAGGAAGAAUUGUGUU----   -|  CCCU   UC  UG   C           AUGUUUAC 
                     GCG CUC    CAG  CC  AGA CCUAACUUGUG        C
                     UGC GAG    GUC  GG  UCU GGAUUGGGCAC        G
AAGGAAGUCGCUACGUUUCCG   U^  C---   GA  GU   C           CUAAAUUU 
120       110       100           90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
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Mature sequence

Rno-Mir-10-P3d_5p
mirBase accessionMIMAT0000830
Sequence 
0- UCCCUGAGACCCUAACUUGUGA -22
Get sequence
Proposed targets microrna.org: MIMAT0000830
TargetScanVert: rno-miR-125b-5p
miRDB: MIMAT0000830
Star sequence

Rno-Mir-10-P3d_3p*
mirBase accessionMIMAT0004730
Sequence 
40- ACGGGUUAGGCUCUUGGGAGCU -62
Get sequence
Proposed targets microrna.org: MIMAT0004730
TargetScanVert: rno-miR-125b-1-3p
miRDB: MIMAT0004730