Mir-10-P3d1

MirGeneDB ID

Dre-Mir-10-P3d1

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Zebrafish (Danio rerio)

MiRBase ID

dre-mir-125b-1

Paralogues

Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b1-v2 Dre-Mir-10-P1b2-v1 Dre-Mir-10-P1b2-v2 Dre-Mir-10-P1c1-v1 Dre-Mir-10-P1c1-v2 Dre-Mir-10-P1c2-v1 Dre-Mir-10-P1c2-v2 Dre-Mir-10-P1d1-v1 Dre-Mir-10-P1d1-v2 Dre-Mir-10-P2c1 Dre-Mir-10-P2c2 Dre-Mir-10-P2d1 Dre-Mir-10-P2d2 Dre-Mir-10-P3b1 Dre-Mir-10-P3b2 Dre-Mir-10-P3c1 Dre-Mir-10-P3c2 Dre-Mir-10-P3d2

Orthologues

Aae-Mir-10-P3 Aca-Mir-10-P3d Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Ami-Mir-10-P3d Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Bta-Mir-10-P3d Cfa-Mir-10-P3d Cin-Mir-10-P3 Cja-Mir-10-P3d Cli-Mir-10-P3d Cmi-Mir-10-P3d Cpi-Mir-10-P3d Cpo-Mir-10-P3d Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dno-Mir-10-P3d Dpu-Mir-10-P3 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Eca-Mir-10-P3d Egr-Mir-10-P3 Esc-Mir-10-P3 Ete-Mir-10-P3d Gga-Mir-10-P3d Gja-Mir-10-P3d Gmo-Mir-10-P3d1 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Hsa-Mir-10-P3d Isc-Mir-10-P3 Laf-Mir-10-P3d Lan-Mir-10-P3 Lch-Mir-10-P3d Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Loc-Mir-10-P3d Mal-Mir-10-P3d1 Mdo-Mir-10-P3d Mgi-Mir-10-P3 Mml-Mir-10-P3d Mmr-Mir-10-P3d Mmu-Mir-10-P3d Mom-Mir-10-P3 Mun-Mir-10-P3d Nag-Mir-10-P3-v1 Nag-Mir-10-P3-v2 Neu-Mir-10-P3d Nve-Mir-10 Oan-Mir-10-P3d Obi-Mir-10-P3 Ocu-Mir-10-P3d Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pab-Mir-10-P3d Pau-Mir-10-P3 Pbv-Mir-10-P3d Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rno-Mir-10-P3d Rph-Mir-10-P3 Sha-Mir-10-P3d Sko-Mir-10-P3 Snu-Mir-10-P3 Spt-Mir-10-P3d Spu-Mir-10-P3 Sto-Mir-10-P3d Tca-Mir-10-P3 Tgu-Mir-10-P3d Tni-Mir-10-P3d1 War-Mir-10-P3 Xbo-Mir-10-P3 Xtr-Mir-10-P3d

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(danRer11)

chr15: 21447701-21447762 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3d1)

Mir-10-P2d1 chr15: 21437656-21437712 [+] UCSC Ensembl
Let-7-P1d1 chr15: 21437886-21437952 [+] UCSC Ensembl
Mir-10-P3d1 chr15: 21447701-21447762 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCGGUUGGUCUGCAAAUGUGCCUCUCACAAUCCCUGAGACCCUAACUUGUGACGUUUUCCUGUUAUGUGCACGGGUUAGGUUCUUGGGAGCUGAGAGGGGUGCUCUGUCAUCAGCCCGCCGG

Get precursor sequence

Structure

        10          20        30         40        50        60
GCGGUUGGUCUGCAAAU-- UG      A  A-|   U    C           ACGUUUUC 
                   G  CCUCUC CA  UCCC GAGA CCUAACUUGUG        C
                   C  GGGGAG GU  AGGG UUCU GGAUUGGGCAC        U
GGCCGCCCGACUACUGUCU GU      A  CG^   -    U           GUGUAUUG 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Mature sequence

Dre-Mir-10-P3d1_5p

mirBase accession

MIMAT0001821

Sequence

0- UCCCUGAGACCCUAACUUGUGA -22

Get sequence

Proposed targets

TargetScanFish: dre-miR-125b

Star sequence

Dre-Mir-10-P3d1_3p*

mirBase accession

MIMAT0031963

Sequence

40- ACGGGUUAGGUUCUUGGGAGCU -62

Get sequence