Mir-10-P1b2

MirGeneDB ID

Tni-Mir-10-P1b2

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-10d

Paralogues

Tni-Mir-10-P1b1-v1 Tni-Mir-10-P1b1-v2 Tni-Mir-10-P1c1-v1 Tni-Mir-10-P1c1-v2 Tni-Mir-10-P1c2-v1 Tni-Mir-10-P1c2-v2 Tni-Mir-10-P1d1-v1 Tni-Mir-10-P1d1-v2 Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Tni-Mir-10-P3b2 Tni-Mir-10-P3d1 Tni-Mir-10-P3d2

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1b-v1 Aca-Mir-10-P1b-v2 Ami-Mir-10-P1b-v1 Ami-Mir-10-P1b-v2 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Bta-Mir-10-P1b-v1 Bta-Mir-10-P1b-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1b-v1 Cfa-Mir-10-P1b-v2 Cgi-Mir-10-P1 Cli-Mir-10-P1b-v1 Cli-Mir-10-P1b-v2 Cmi-Mir-10-P1b-v1 Cmi-Mir-10-P1b-v2 Cpi-Mir-10-P1b-v1 Cpi-Mir-10-P1b-v2 Cpo-Mir-10-P1b-v1 Cpo-Mir-10-P1b-v2 Cte-Mir-10-P1 Dan-Mir-10-P1 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1b-v1 Dno-Mir-10-P1b-v2 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dre-Mir-10-P1b2-v1 Dre-Mir-10-P1b2-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Ete-Mir-10-P1b-v1 Ete-Mir-10-P1b-v2 Gga-Mir-10-P1b-v1 Gga-Mir-10-P1b-v2 Gja-Mir-10-P1b-v1 Gja-Mir-10-P1b-v2 Gmo-Mir-10-P1b2-v1 Gmo-Mir-10-P1b2-v2 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1b-v2 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lch-Mir-10-P1b Lgi-Mir-10-P1 Loc-Mir-10-P1b-v1 Loc-Mir-10-P1b-v2 Mal-Mir-10-P1b2 Mdo-Mir-10-P1b-v1 Mdo-Mir-10-P1b-v2 Mml-Mir-10-P1b-v1 Mml-Mir-10-P1b-v2 Mmu-Mir-10-P1b-v1 Mmu-Mir-10-P1b-v2 Mun-Mir-10-P1b-v1 Mun-Mir-10-P1b-v2 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1b-v1 Oan-Mir-10-P1b-v2 Ocu-Mir-10-P1b-v1 Ocu-Mir-10-P1b-v2 Pbv-Mir-10-P1b-v1 Pbv-Mir-10-P1b-v2 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Rno-Mir-10-P1b-v1 Rno-Mir-10-P1b-v2 Sha-Mir-10-P1b-v1 Sha-Mir-10-P1b-v2 Sko-Mir-10-P1 Spt-Mir-10-P1b Spu-Mir-10-P1 Sto-Mir-10-P1b-v1 Sto-Mir-10-P1b-v2 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 Tgu-Mir-10-P1b-v1 Tgu-Mir-10-P1b-v2 Xtr-Mir-10-P1b-v1 Xtr-Mir-10-P1b-v2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

17: 9715801-9715864 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCAGCCGGUGAGGUGCUCGUCGUCUAUACAUACCCUGUAGAACCGAAUGUGUGUGCAGCUGACUUGAUCACAGAUUGGGUUCUAGGGGAGUCUAUGGGCGCUGAAUAAUCAUCGAUGAACGGCU

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Structure

        10            20        30        40        50        60 
GCAGCCGGUGAGGUGCU----| U        C  A    G       G   G    UGCAGCU 
                     CG CGUCUAUA AU CCCU UAGAACC AAU UGUG       \
                     GU GCGGGUAU UG GGGG AUCUUGG UUA ACAC       G
UCGGCAAGUAGCUACUAAUAA^ C        C  A    -       G   G    UAGUUCA 
  120       110       100        90         80        70

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-10-P1b2_5p

mirBase accession

MIMAT0003772

Sequence

0- UACCCUGUAGAACCGAAUGUGUG -23

Get sequence

Star sequence

Tni-Mir-10-P1b2_3p* (predicted)

mirBase accession

None

Sequence

40- CAGAUUGGGUUCUAGGGGAGUCUA -64

Get sequence