MirGeneDB 3.0

MirGeneDB ID

Cfa-Mir-10-P1b-v2

Family name MIR-10 (all species)
Seed CCCUGUA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-10b
Paralogues Cfa-Mir-10-P1b-v1  Cfa-Mir-10-P1c-v1  Cfa-Mir-10-P1c-v2  Cfa-Mir-10-P2b  Cfa-Mir-10-P2c  Cfa-Mir-10-P2d  Cfa-Mir-10-P3b  Cfa-Mir-10-P3c  Cfa-Mir-10-P3d 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Aca-Mir-10-P1b-v1  Aca-Mir-10-P1b-v2  Adi-Mir-10  Aga-Mir-10-P1-v1  Aga-Mir-10-P1-v2  Agr-Mir-10-P1  Ami-Mir-10-P1b-v1  Ami-Mir-10-P1b-v2  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Bta-Mir-10-P1b-v1  Bta-Mir-10-P1b-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cja-Mir-10-P1b-v1  Cja-Mir-10-P1b-v2  Cli-Mir-10-P1b-v1  Cli-Mir-10-P1b-v2  Cmi-Mir-10-P1b-v1  Cmi-Mir-10-P1b-v2  Cpi-Mir-10-P1b-v1  Cpi-Mir-10-P1b-v2  Cpo-Mir-10-P1b-v1  Cpo-Mir-10-P1b-v2  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dlo-Mir-10-P1-v2  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dno-Mir-10-P1b-v1  Dno-Mir-10-P1b-v2  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dre-Mir-10-P1b1-v1  Dre-Mir-10-P1b1-v2  Dre-Mir-10-P1b2-v1  Dre-Mir-10-P1b2-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Eca-Mir-10-P1b-v1  Eca-Mir-10-P1b-v2  Efe-Mir-10-P1  Egr-Mir-10-P1  Ete-Mir-10-P1b-v1  Ete-Mir-10-P1b-v2  Gga-Mir-10-P1b-v1  Gga-Mir-10-P1b-v2  Gja-Mir-10-P1b-v1  Gja-Mir-10-P1b-v2  Gmo-Mir-10-P1b1-v1  Gmo-Mir-10-P1b1-v2  Gmo-Mir-10-P1b2-v1  Gmo-Mir-10-P1b2-v2  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hmi-Mir-10-P1b  Hru-Mir-10-P1  Hsa-Mir-10-P1b-v1  Hsa-Mir-10-P1b-v2  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Laf-Mir-10-P1b  Lch-Mir-10-P1b  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Loc-Mir-10-P1b-v1  Loc-Mir-10-P1b-v2  Mal-Mir-10-P1b1-v1  Mal-Mir-10-P1b1-v2  Mal-Mir-10-P1b2  Mdo-Mir-10-P1b-v1  Mdo-Mir-10-P1b-v2  Mgi-Mir-10-P1  Mml-Mir-10-P1b-v1  Mml-Mir-10-P1b-v2  Mmr-Mir-10-P1b-v1  Mmr-Mir-10-P1b-v2  Mmu-Mir-10-P1b-v1  Mmu-Mir-10-P1b-v2  Mom-Mir-10-P1  Mun-Mir-10-P1b-v1  Mun-Mir-10-P1b-v2  Neu-Mir-10-P1b-v1  Neu-Mir-10-P1b-v2  Npo-Mir-10-P1  Nve-Mir-10  Oan-Mir-10-P1b-v1  Oan-Mir-10-P1b-v2  Ocu-Mir-10-P1b-v1  Ocu-Mir-10-P1b-v2  Ofu-Mir-10-P1  Pab-Mir-10-P1b-v1  Pab-Mir-10-P1b-v2  Pau-Mir-10-P1  Pbv-Mir-10-P1b-v1  Pbv-Mir-10-P1b-v2  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rno-Mir-10-P1b-v1  Rno-Mir-10-P1b-v2  Rph-Mir-10-P1  Sha-Mir-10-P1b-v1  Sha-Mir-10-P1b-v2  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spt-Mir-10-P1b  Spu-Mir-10-P1  Sto-Mir-10-P1b-v1  Sto-Mir-10-P1b-v2  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tgu-Mir-10-P1b-v1  Tgu-Mir-10-P1b-v2  Tni-Mir-10-P1b1-v1  Tni-Mir-10-P1b1-v2  Tni-Mir-10-P1b2  War-Mir-10-P1  Xbo-Mir-10-P1  Xla-Mir-10-P1b3-v1  Xla-Mir-10-P1b3-v2  Xla-Mir-10-P1b4-v1  Xla-Mir-10-P1b4-v2  Xtr-Mir-10-P1b-v1  Xtr-Mir-10-P1b-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(canFam3_add)
chr36: 19958931-19958990 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1b-v2)
Mir-10-P1b-v1 chr36: 19958930-19958991 [+] UCSC Ensembl
Mir-10-P1b-v2 chr36: 19958931-19958990 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACCCGGAGGUAGUAACGUUGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGGUAUCCACAUAGUCACAGAUUCGAUUCUAGGGGAAUAUAUGGUCGAUGCAAAAACUUCAUGUUUCU
Get precursor sequence
Structure
        10          20        30        40        50          
AACCCGGAGGUAGUAAC--|   U        A    G     C          UGGUAUC 
                   GUUG CUAUAUAU CCCU UAGAA CGAAUUUGUG       \
                   UAGC GGUAUAUA GGGG AUCUU GCUUAGACAC       C
UCUUUGUACUUCAAAAACG^   U        A    -     A          UGAUACA 
.       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-10-P1b-v2_5p

mirBase accessionMIMAT0009837
Sequence
0- ACCCUGUAGAACCGAAUUUGUG -22
Get sequence
Proposed targets TargetScanVert: cfa-miR-10b
miRDB: MIMAT0009837
Star sequence

Cfa-Mir-10-P1b-v2_3p*

mirBase accessionNone
Sequence
39- CAGAUUCGAUUCUAGGGGAAU -60
Get sequence