Mir-10-P1b1-v2

MirGeneDB ID

Tni-Mir-10-P1b1-v2

Family name

MIR-10 (all species)

Seed

CCCUGUA

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-10b-2

Paralogues

Tni-Mir-10-P1b1-v1 Tni-Mir-10-P1b2 Tni-Mir-10-P1c1-v1 Tni-Mir-10-P1c1-v2 Tni-Mir-10-P1c2-v1 Tni-Mir-10-P1c2-v2 Tni-Mir-10-P1d1-v1 Tni-Mir-10-P1d1-v2 Tni-Mir-10-P2d1 Tni-Mir-10-P2d2 Tni-Mir-10-P3b2 Tni-Mir-10-P3d1 Tni-Mir-10-P3d2

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Aca-Mir-10-P1b-v1 Aca-Mir-10-P1b-v2 Ami-Mir-10-P1b-v1 Ami-Mir-10-P1b-v2 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Bta-Mir-10-P1b-v1 Bta-Mir-10-P1b-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cfa-Mir-10-P1b-v1 Cfa-Mir-10-P1b-v2 Cgi-Mir-10-P1 Cli-Mir-10-P1b-v1 Cli-Mir-10-P1b-v2 Cmi-Mir-10-P1b-v1 Cmi-Mir-10-P1b-v2 Cpi-Mir-10-P1b-v1 Cpi-Mir-10-P1b-v2 Cpo-Mir-10-P1b-v1 Cpo-Mir-10-P1b-v2 Cte-Mir-10-P1 Dan-Mir-10-P1 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dno-Mir-10-P1b-v1 Dno-Mir-10-P1b-v2 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dre-Mir-10-P1b1-v1 Dre-Mir-10-P1b1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Ete-Mir-10-P1b-v1 Ete-Mir-10-P1b-v2 Gga-Mir-10-P1b-v1 Gga-Mir-10-P1b-v2 Gja-Mir-10-P1b-v1 Gja-Mir-10-P1b-v2 Gmo-Mir-10-P1b1-v1 Gmo-Mir-10-P1b1-v2 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hsa-Mir-10-P1b-v1 Hsa-Mir-10-P1b-v2 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lch-Mir-10-P1b Lgi-Mir-10-P1 Loc-Mir-10-P1b-v1 Loc-Mir-10-P1b-v2 Mal-Mir-10-P1b1-v1 Mal-Mir-10-P1b1-v2 Mdo-Mir-10-P1b-v1 Mdo-Mir-10-P1b-v2 Mml-Mir-10-P1b-v1 Mml-Mir-10-P1b-v2 Mmu-Mir-10-P1b-v1 Mmu-Mir-10-P1b-v2 Mun-Mir-10-P1b-v1 Mun-Mir-10-P1b-v2 Npo-Mir-10-P1 Nve-Mir-10 Oan-Mir-10-P1b-v1 Oan-Mir-10-P1b-v2 Ocu-Mir-10-P1b-v1 Ocu-Mir-10-P1b-v2 Pbv-Mir-10-P1b-v1 Pbv-Mir-10-P1b-v2 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Rno-Mir-10-P1b-v1 Rno-Mir-10-P1b-v2 Sha-Mir-10-P1b-v1 Sha-Mir-10-P1b-v2 Sko-Mir-10-P1 Spt-Mir-10-P1b Spu-Mir-10-P1 Sto-Mir-10-P1b-v1 Sto-Mir-10-P1b-v2 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 Tgu-Mir-10-P1b-v1 Tgu-Mir-10-P1b-v2 Xtr-Mir-10-P1b-v1 Xtr-Mir-10-P1b-v2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Eumetazoa

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

2: 13424291-13424350 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P1b1-v2)

Mir-10-P1b1-v1 2: 13424290-13424351 [-] UCSC Ensembl
Mir-10-P1b1-v2 2: 13424291-13424350 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CGAGUUUGGCUCUUGCCGUCGUCUAUAUAUACCCUGUAGAACCGAAUUUGUGUGAUCAAGUCACAGUCACAGAUUCGAUUCUAGGGGAGUAUAUGGGCGAUGAAAAAACGUCGAUUUAAU

Get precursor sequence

Structure

        10          20        30        40        50          
CGAGUUUGGCUCUUGCC--|            A    G     C          UGAUCAA 
                   GUCGUCUAUAUAU CCCU UAGAA CGAAUUUGUG       \
                   UAGCGGGUAUAUG GGGG AUCUU GCUUAGACAC       G
UAAUUUAGCUGCAAAAAAG^            A    -     A          UGACACU 
.       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

Tissue expression

Sp	Sp	Sp	To

Mature sequence

Tni-Mir-10-P1b1-v2_5p

mirBase accession

MIMAT0002964

Sequence

0- ACCCUGUAGAACCGAAUUUGUG -22

Get sequence

Star sequence

Tni-Mir-10-P1b1-v2_3p* (predicted)

mirBase accession

None

Sequence

39- CAGAUUCGAUUCUAGGGGAGU -60

Get sequence