MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-10-P1s

Family name MIR-10 (all species)
Seed ACCCUGU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-10a
Paralogues Sme-Mir-10-P1t  Sme-Mir-10-P3s  Sme-Mir-10-P3t  Sme-Mir-10-P3u 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Adi-Mir-10  Aga-Mir-10-P1-v1  Aga-Mir-10-P1-v2  Agr-Mir-10-P1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dlo-Mir-10-P1-v2  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  War-Mir-10-P1  Xbo-Mir-10-P1 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Eumetazoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000001_dd_Smes_g4_1: 11242782-11242835 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGUUUAUUUAAUUUGUUUCCUUGAUAUAAACCCUGUAGAUCCGAGUUAGAUGGUUUUUCCAAUUCGAAUCUCGGGGAAUUAUAUUAAUGAGAUUAUCUUCUUUAAACAAUUU
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Structure
        10           20        30         40        50      
CAAGUUUAUUUAAUUUG---    C         A-|    U    C      A  UGG 
                    UUUC UUGAUAUAA  CCCUG AGAU CGAGUU GA   \
                    AGAG AAUUAUAUU  GGGGC UCUA GCUUAA CU   U
UUUAACAAAUUUCUUCUAUU    U         AA^    -    A      C  UUU 
  110       100        90        80         70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 3p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-10-P1s_5p
mirBase accessionMIMAT0011223
Sequence 
0- AACCCUGUAGAUCCGAGUUAGA -22
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Star sequence

Sme-Mir-10-P1s_3p*
mirBase accessionMIMAT0012130
Sequence 
32- AAUUCGAAUCUCGGGGAAUUAU -54
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