MirGeneDB ID | Sme-Mir-10-P1s |
Family name |
MIR-10 (all species) |
Seed |
ACCCUGU |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-mir-10a
|
Paralogues |
Sme-Mir-10-P1t
Sme-Mir-10-P3s
Sme-Mir-10-P3t
Sme-Mir-10-P3u
|
Orthologues |
Aae-Mir-10-P1-v1
Aae-Mir-10-P1-v2
Asu-Mir-10-P1
Bfl-Mir-10-P1-v1
Bfl-Mir-10-P1-v2
Bge-Mir-10-P1-v1
Bge-Mir-10-P1-v2
Bla-Mir-10-P1-v1
Bla-Mir-10-P1-v2
Cbr-Mir-10-P1
Cel-Mir-10-P1
Cgi-Mir-10-P1
Cte-Mir-10-P1
Dan-Mir-10-P1
Dma-Mir-10-P1-v1
Dma-Mir-10-P1-v2
Dme-Mir-10-P1
Dmo-Mir-10-P1
Dpu-Mir-10-P1-v1
Dpu-Mir-10-P1-v2
Dsi-Mir-10-P1
Dya-Mir-10-P1
Hme-Mir-10-P1-v1
Hme-Mir-10-P1-v2
Isc-Mir-10-P1-v1
Isc-Mir-10-P1-v2
Lgi-Mir-10-P1
Npo-Mir-10-P1
Nve-Mir-10
Pfl-Mir-10-P1
Pmi-Mir-10-P1
Sko-Mir-10-P1
Spu-Mir-10-P1
Tca-Mir-10-P1-v1
Tca-Mir-10-P1-v2
|
Node of Origin (locus) |
S. mediterranea
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000001_dd_Smes_g4_1: 11242782-11242835 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAAGUUUAUUUAAUUUGUUUCCUUGAUAUAAACCCUGUAGAUCCGAGUUAGAUGGUUUUUCCAAUUCGAAUCUCGGGGAAUUAUAUUAAUGAGAUUAUCUUCUUUAAACAAUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
CAAGUUUAUUUAAUUUG--- C A-| U C A UGG
UUUC UUGAUAUAA CCCUG AGAU CGAGUU GA \
AGAG AAUUAUAUU GGGGC UCUA GCUUAA CU U
UUUAACAAAUUUCUUCUAUU U AA^ - A C UUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut +1 on the 3p arm. |
3' NTU |
No
|
Motifs | No |
Tissue expression
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Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Ne |
Wh |
Wh |
Wh |
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Mature sequence |
Sme-Mir-10-P1s_5p |
mirBase accession | MIMAT0011223 |
Sequence |
0- AACCCUGUAGAUCCGAGUUAGA -22
Get sequence
|
Star sequence |
Sme-Mir-10-P1s_3p* |
mirBase accession | MIMAT0012130 |
Sequence |
32- AAUUCGAAUCUCGGGGAAUUAU -54
Get sequence
|