MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-10-P3s

Family name MIR-10 (all species)
Seed CCCUGAG
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-125a
Paralogues Sme-Mir-10-P1s  Sme-Mir-10-P1t  Sme-Mir-10-P3t  Sme-Mir-10-P3u 
Orthologues Aae-Mir-10-P3  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Asp-Mir-10  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Cin-Mir-10-P3  Cte-Mir-10-P3  Dan-Mir-10-P3  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Egr-Mir-10-P3  Esc-Mir-10-P3  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Isc-Mir-10-P3  Lan-Mir-10-P3  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Mgi-Mir-10-P3  Mom-Mir-10-P3  Nag-Mir-10-P3-v1  Nag-Mir-10-P3-v2  Nve-Mir-10  Obi-Mir-10-P3  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pau-Mir-10-P3  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Ple-Mir-10-P3  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rph-Mir-10-P3  Sko-Mir-10-P3  Snu-Mir-10-P3  Spu-Mir-10-P3  Tca-Mir-10-P3  War-Mir-10-P3  Xbo-Mir-10-P3 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Eumetazoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000015_dd_Smes_g4_15: 6805749-6805809 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGAUUUCGAUGCUGUUGUCUGUAUUUAUAUCCCUGAGACCAUUGACUGCAUUUGUUUGAGGUUUCAAUGUAGUUUUUGGUAUCAGGAUUGUGGAUAUGGAGCAUUCUUCCCGGUUUCAUU
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Structure
        10          20        30        40        50          
UUGAUUUCGAUGCUGUUG--|           UC     G    UU        UUGUUUG 
                    UCUGUAUUUAUA  CCUGA ACCA  GACUGCAU       \
                    AGGUAUAGGUGU  GGACU UGGU  UUGAUGUA       A
UUACUUUGGCCCUUCUUACG^           UA     A    UU        ACUUUGG 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-10-P3s_5p
mirBase accessionMIMAT0003996
Sequence 
0- UCCCUGAGACCAUUGACUGCAU -22
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Star sequence

Sme-Mir-10-P3s_3p*
mirBase accessionMIMAT0003997
Sequence 
39- GUAGUUUUUGGUAUCAGGAUUG -61
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