MirGeneDB ID | Sme-Mir-10-P3u |
Family name |
MIR-10 (all species) |
Seed |
CCCUGAG |
Species |
Freshwater planarian (Schmidtea mediterranea) |
MiRBase ID |
sme-lin-4
|
Paralogues |
Sme-Mir-10-P1s
Sme-Mir-10-P1t
Sme-Mir-10-P3s
Sme-Mir-10-P3t
|
Orthologues |
Aae-Mir-10-P3
Adi-Mir-10
Aga-Mir-10-P3
Agr-Mir-10-P3
Asp-Mir-10
Asu-Mir-10-P3
Bfl-Mir-10-P3
Bge-Mir-10-P3
Bko-Mir-10-P3
Bla-Mir-10-P3
Bpl-Mir-10-P3
Cin-Mir-10-P3
Cte-Mir-10-P3
Dan-Mir-10-P3
Dlo-Mir-10-P3
Dma-Mir-10-P3
Dme-Mir-10-P3
Dmo-Mir-10-P3
Dpu-Mir-10-P3
Dsi-Mir-10-P3
Dya-Mir-10-P3
Eba-Mir-10-P3
Egr-Mir-10-P3
Esc-Mir-10-P3
Gpa-Mir-10-P3
Gsa-Mir-10-P3
Gsp-Mir-10-P3
Hru-Mir-10-P3
Isc-Mir-10-P3
Lan-Mir-10-P3
Lgi-Mir-10-P3
Lhy-Mir-10-P3
Llo-Mir-10-P3
Mgi-Mir-10-P3
Mom-Mir-10-P3
Nag-Mir-10-P3-v1
Nag-Mir-10-P3-v2
Nve-Mir-10
Obi-Mir-10-P3
Ofu-Mir-10-P3
Ovu-Mir-10-P3
Pau-Mir-10-P3
Pca-Mir-10-P3
Pcr-Mir-10-P3
Pdu-Mir-10-P3
Ple-Mir-10-P3
Pmi-Mir-10-P3
Pve-Mir-10-P3
Rph-Mir-10-P3
Sko-Mir-10-P3
Snu-Mir-10-P3
Spu-Mir-10-P3
Tca-Mir-10-P3
War-Mir-10-P3
Xbo-Mir-10-P3
|
Node of Origin (locus) |
Platyhelminthes
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Sme_GCA_002600895.1_ASM260089v1_alt) |
NNSW01000076_dd_Smes_g4_76: 2511124-2511196 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUAUACUCAUUCAUUGAUCAGUUAUAAUCUCCCUGAGACCUUCGACUGUGUUUGACCAUUAAAUUAUCAGAAAUGAUUGCACAGUCGAUGAUCAUAGGGUUAAAAUAGCCGAUGUUACCUUUCACUUUUGAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUUAUACUCAUUCAUUG--| A AAUCU A CCU UUGACCAUUAAAU
AUC GUUAU CCCUG GA UCGACUGUGU \
UAG CGAUA GGGAU CU AGCUGACACG U
CAGUUUUCACUUUCCAUUG^ C AAAUU A AGU UUAGUAAAGACUA
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Ag |
Ag |
Di |
Gf |
Ne |
Ph |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Se |
Wh |
Wh |
Wh |
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Mature sequence |
Sme-Mir-10-P3u_5p |
mirBase accession | MIMAT0003956 |
Sequence |
0- UCCCUGAGACCUUCGACUGUGU -22
Get sequence
|
Star sequence |
Sme-Mir-10-P3u_3p* |
mirBase accession | MIMAT0012089 |
Sequence |
51- ACAGUCGAUGAUCAUAGGGUUA -73
Get sequence
|