MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-10-P3o4

Family name MIR-10 (all species)
Seed CCCUGAG
Species Blood fluke (Schistosoma mansoni)
MiRBase ID sma-mir-125a
Paralogues Sma-Mir-10-P1  Sma-Mir-10-P3o3  Sma-Mir-10-P3o5 
Orthologues Aae-Mir-10-P3  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Asp-Mir-10  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Cin-Mir-10-P3  Cte-Mir-10-P3  Dan-Mir-10-P3  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Egr-Mir-10-P3  Esc-Mir-10-P3  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Isc-Mir-10-P3  Lan-Mir-10-P3  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Lpo-Mir-10-P3o  Mgi-Mir-10-P3  Mom-Mir-10-P3  Nag-Mir-10-P3-v1  Nag-Mir-10-P3-v2  Nve-Mir-10  Obi-Mir-10-P3  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pau-Mir-10-P3  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Ple-Mir-10-P3  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rph-Mir-10-P3  Sko-Mir-10-P3  Snu-Mir-10-P3  Spu-Mir-10-P3  Tca-Mir-10-P3  War-Mir-10-P3  Xbo-Mir-10-P3 
Node of Origin (locus) S. mansoni
Node of Origin (family) Eumetazoa
Genome context
(GCA_000237925.5_SM_V9_genomic)		 HE601630.3: 15003808-15003886 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCAAUGAAUACACCUAAUUAUCAUUUUGCUCCCUGAGACCCUUUGAUUGCCUUGUUAUUACAAUACUGUACAUAACAUGAUCAGGCAGCCAAAGUGACUCAGGUAUGCAUAAUAGGUGUUAAACUUCAAAACGUAUAC
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Structure
        10         20         30         40        50        60        
AGCAAUGAAUACACCUAAU-    -   U   UC-|     ACC     AU    UUGUUAUUACAAUAC 
                    UAUC AUU UGC   CCUGAG   CUUUG  UGCC               U
                    GUGG UAA ACG   GGACUC   GAAAC  ACGG               G
CAUAUGCAAAACUUCAAAUU    A   U   UAU^     AGU     CG    ACUAGUACAAUACAU 
       130       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Mature sequence

Sma-Mir-10-P3o4_5p
mirBase accessionMIMAT0010183
Sequence 
0- UCCCUGAGACCCUUUGAUUGCC -22
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Star sequence

Sma-Mir-10-P3o4_3p*
mirBase accessionMIMAT0032105
Sequence 
56- CAGCCAAAGUGACUCAGGUAUGC -79
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