MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-10-P1o1

Family name MIR-10 (all species)
Seed ACCCUGU
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-10a
Paralogues Pma-Mir-10-P1o2  Pma-Mir-10-P2o1  Pma-Mir-10-P2o2  Pma-Mir-10-P3o1  Pma-Mir-10-P3o2 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Adi-Mir-10  Aga-Mir-10-P1-v1  Aga-Mir-10-P1-v2  Agr-Mir-10-P1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dlo-Mir-10-P1-v2  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Lpo-Mir-10-P1o-v1  Lpo-Mir-10-P1o-v2  Mgi-Mir-10-P1  Mom-Mir-10-P1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  War-Mir-10-P1  Xbo-Mir-10-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Eumetazoa
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046072.1: 6296303-6296365 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGUGCCCGCUGAUAAGGGUGGCCGAUGUAUACCCUGUGGACUCGAAUUUGUGCUGGCUUCUGGAAUCCACAAAUUCGAUUCUUAAGGACUACAUAGUCACCUCCUGUGCAACAGCGGAGAGU
Get precursor sequence
Structure
        10            20        30        40        50        60 
CCGUGCCCGCUGAUAAG----|     CG     UAC   GU   C           CUGGCUU 
                     GGUGGC  AUGUA   CCU  GGA UCGAAUUUGUG       \
                     CCACUG  UACAU   GGA  UCU AGCUUAAACAC       C
UGAGAGGCGACAACGUGUCCU^     A-     CA-   AU   U           CUAAGGU 
 120       110       100         90         80        70
Deep sequencing
Go to detailed chart
CommentNot in assembly but in trace archives.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-10-P1o1_5p
mirBase accessionMIMAT0019378
Sequence 
0- UACCCUGUGGACUCGAAUUUGUG -23
Get sequence
Star sequence

Pma-Mir-10-P1o1_3p* (predicted)
mirBase accessionNone
Sequence 
40- CAAAUUCGAUUCUUAAGGACUAC -63
Get sequence