MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-10-P3o2

Family name MIR-10 (all species)
Seed CCCUGAG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID
Paralogues Pma-Mir-10-P1o1  Pma-Mir-10-P1o2  Pma-Mir-10-P2o1  Pma-Mir-10-P2o2  Pma-Mir-10-P3o1 
Orthologues Aae-Mir-10-P3  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Asp-Mir-10  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Cin-Mir-10-P3  Cte-Mir-10-P3  Dan-Mir-10-P3  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Egr-Mir-10-P3  Esc-Mir-10-P3  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Isc-Mir-10-P3  Lan-Mir-10-P3  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Lpo-Mir-10-P3o  Mgi-Mir-10-P3  Mom-Mir-10-P3  Nag-Mir-10-P3-v1  Nag-Mir-10-P3-v2  Nve-Mir-10  Obi-Mir-10-P3  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pau-Mir-10-P3  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Ple-Mir-10-P3  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rph-Mir-10-P3  Sko-Mir-10-P3  Snu-Mir-10-P3  Spu-Mir-10-P3  Tca-Mir-10-P3  War-Mir-10-P3  Xbo-Mir-10-P3 
Node of Origin (locus) P. marinus
Node of Origin (family) Eumetazoa
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046130.1: 3640038-3640096 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCCUGGGCCCCCCUGGGCCCCCUCUCCCUCCCUGAGACCCUAACUCGUGACUCAGCUCCAGCAUCACGAGUCGGGGGCUCGGGGGUGGAGCGGAGGCCCCAGCCAGCGGACCGCCCU
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Structure
        10          20        30        40        50         
CCCCCUGGGCCCCCCUG--|   C  U    C        A   UA        CUCAGC 
                   GGCC CC CUCC UCCCUGAG CCC  ACUCGUGA      \
                   CCGG GG GAGG GGGGGCUC GGG  UGAGCACU      U
UCCCGCCAGGCGACCGACC^   A  C    U        G   GC        ACGACC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-10-P3o2_5p
mirBase accessionNone
Sequence 
0- UCCCUGAGACCCUAACUCGUGA -22
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Star sequence

Pma-Mir-10-P3o2_3p* (predicted)
mirBase accessionNone
Sequence 
37- ACGAGUCGGGGGCUCGGGGGUG -59
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