Mir-10-P3o1

MirGeneDB ID

Pma-Mir-10-P3o1

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-125

Paralogues

Pma-Mir-10-P1o1 Pma-Mir-10-P1o2 Pma-Mir-10-P2o1 Pma-Mir-10-P2o2 Pma-Mir-10-P3o2

Orthologues

Aae-Mir-10-P3 Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Cin-Mir-10-P3 Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Egr-Mir-10-P3 Esc-Mir-10-P3 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Isc-Mir-10-P3 Lan-Mir-10-P3 Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Lpo-Mir-10-P3o Mgi-Mir-10-P3 Mom-Mir-10-P3 Nag-Mir-10-P3-v1 Nag-Mir-10-P3-v2 Nve-Mir-10 Obi-Mir-10-P3 Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pau-Mir-10-P3 Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rph-Mir-10-P3 Sko-Mir-10-P3 Snu-Mir-10-P3 Spu-Mir-10-P3 Tca-Mir-10-P3 War-Mir-10-P3 Xbo-Mir-10-P3

Node of Origin (locus)

P. marinus

Node of Origin (family)

Eumetazoa

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046100.1: 8251849-8251907 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P3o1)

Mir-10-P2o1 NC_046100.1: 8228227-8228284 [+] UCSC Ensembl
Let-7-P1o1 NC_046100.1: 8235683-8235748 [+] UCSC Ensembl
Mir-10-P3o1 NC_046100.1: 8251849-8251907 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGCACGGAGCGAUCGAGCCUUUUGCGCGAUCCCUGAGACCCUAACUUGUGAGUUGGUUGCCCUGUCACUGGUUAGGCUCUUGGGAACCGUGCAGAAUGGCAAAUCUGAGAUCGAAGGA

Get precursor sequence

Structure

        10         20         30         40        50         
AGGCACGGAGCGAUCGA-   -         A-|   U    C       U    GUUGGU 
                  GCC UUUUGCGCG  UCCC GAGA CCUAACU GUGA      \
                  CGG AAGACGUGC  AGGG UUCU GGAUUGG CACU      U
AGGAAGCUAGAGUCUAAA   U         CA^   -    C       U    GUCCCG 
       110       100        90         80        70        60