MirGeneDB 3.0
MirGeneDB ID

Sro-Mir-10-P1w

Family name MIR-10 (all species)
Seed ACCCUGU
Species Roscoff worm (Symsagittifera roscoffensis)
MiRBase ID
Paralogues Sro-Mir-10-P1x 
Orthologues Aae-Mir-10-P1-v1  Aae-Mir-10-P1-v2  Adi-Mir-10  Aga-Mir-10-P1-v1  Aga-Mir-10-P1-v2  Agr-Mir-10-P1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bfl-Mir-10-P1-v2  Bge-Mir-10-P1-v1  Bge-Mir-10-P1-v2  Bla-Mir-10-P1-v1  Bla-Mir-10-P1-v2  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dlo-Mir-10-P1-v2  Dma-Mir-10-P1-v1  Dma-Mir-10-P1-v2  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dpu-Mir-10-P1-v2  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hme-Mir-10-P1-v2  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Isc-Mir-10-P1-v2  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  War-Mir-10-P1  Xbo-Mir-10-P1 
Node of Origin (locus) S. roscoffensis
Node of Origin (family) Eumetazoa
Genome context
(GCA_025153585.1_SymRos_1_5_genomic)		 JANVAR010000364.1: 599067-599140 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAAAAAAAUCAAAGUUAGAAUCUUACGCCACCCUGUAAGAUGAGCGGGUUGAAAUUAUUUCAUAAAAAAUGAUACAAUCAACCCGGUUUCUUACAGGGAUCGAUAAAAUUCUAAUCGCUUCUCACUUUGAAU
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Structure
        10          20         30        40        50        60       
AAAAAAAAAAUCAAAGU--      C   -| CCA          U  G       AAAUUAUUUCAUA 
                   UAGAAU UUA CG   CCCUGUAAGA GA CGGGUUG             \
                   AUCUUA AAU GC   GGGACAUUCU UU GCCCAAC             A
UAAGUUUCACUCUUCGCUA      A   A^ UA-          -  G       UAACAUAGUAAAA 
  130       120       110        100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Po
Mature sequence

Sro-Mir-10-P1w_5p
mirBase accessionNone
Sequence 
0- CACCCUGUAAGAUGAGCGGGUUG -23
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Star sequence

Sro-Mir-10-P1w_3p*
mirBase accessionNone
Sequence 
52- ACCCGGUUUCUUACAGGGAUCG -74
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