Mir-10-P1r

MirGeneDB ID

Csc-Mir-10-P1r

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Arizona bark scorpion (Centruroides sculpturatus)

MiRBase ID

Paralogues

Csc-Mir-10-P1q1-v1 Csc-Mir-10-P1q1-v2 Csc-Mir-10-P1q2-v1 Csc-Mir-10-P1q2-v2 Csc-Mir-10-P1q3-v1 Csc-Mir-10-P1q3-v2 Csc-Mir-10-P2r1 Csc-Mir-10-P2r2 Csc-Mir-10-P3r1 Csc-Mir-10-P3r2 Csc-Mir-10-P4q Csc-Mir-10-P4r

Orthologues

Aae-Mir-10-P1-v1 Aae-Mir-10-P1-v2 Adi-Mir-10 Aga-Mir-10-P1-v1 Aga-Mir-10-P1-v2 Agr-Mir-10-P1 Asp-Mir-10 Asu-Mir-10-P1 Bfl-Mir-10-P1-v1 Bfl-Mir-10-P1-v2 Bge-Mir-10-P1-v1 Bge-Mir-10-P1-v2 Bla-Mir-10-P1-v1 Bla-Mir-10-P1-v2 Cbr-Mir-10-P1 Cel-Mir-10-P1 Cte-Mir-10-P1 Dan-Mir-10-P1 Dgr-Mir-10-P1 Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dma-Mir-10-P1-v1 Dma-Mir-10-P1-v2 Dme-Mir-10-P1 Dmo-Mir-10-P1 Dpu-Mir-10-P1-v1 Dpu-Mir-10-P1-v2 Dsi-Mir-10-P1 Dya-Mir-10-P1 Eba-Mir-10-P1 Efe-Mir-10-P1 Egr-Mir-10-P1 Gpa-Mir-10-P1 Gsp-Mir-10-P1 Hme-Mir-10-P1-v1 Hme-Mir-10-P1-v2 Hru-Mir-10-P1 Isc-Mir-10-P1-v1 Isc-Mir-10-P1-v2 Lgi-Mir-10-P1 Lhy-Mir-10-P1 Llo-Mir-10-P1 Mgi-Mir-10-P1 Mom-Mir-10-P1 Npo-Mir-10-P1 Nve-Mir-10 Ofu-Mir-10-P1 Pau-Mir-10-P1 Pca-Mir-10-P1 Pdu-Mir-10-P1 Pfl-Mir-10-P1 Pmi-Mir-10-P1 Pve-Mir-10-P1 Rph-Mir-10-P1 Sko-Mir-10-P1 Sma-Mir-10-P1 Snu-Mir-10-P1 Spu-Mir-10-P1 Tca-Mir-10-P1-v1 Tca-Mir-10-P1-v2 War-Mir-10-P1 Xbo-Mir-10-P1

Node of Origin (locus)

C. sculpturatus

Node of Origin (family)

Eumetazoa

Genome context
(GCF_000671375.1_CSC)

NW_019384862.1: 289995-290055 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GAAAAAAACCGUGGUAUCAUGUUCUACAUCUACCCUGUAGAACCGAGUUUGUAUGGUGGUUUUGAAACCAAAUUCGGUUCUAGAGUGGUUUGUGUGGUACAUGCCUGAGACUGCCCCACUA

Get precursor sequence

Structure

        10         20        30         40        50          
GAAAAAAACCGUGGUAU-     U      CU   -| G              UAUGGUGG 
                  CAUGU CUACAU  ACC CU UAGAACCGAGUUUG        \
                  GUACA GGUGUG  UGG GA AUCUUGGCUUAAAC        U
AUCACCCCGUCAGAGUCC     U      UU   U^ G              CAAAGUUU 
 .       110       100        90        80        70

Deep sequencing

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Comment

There is a second Dicer cut +1 on the 3p arm.

3' NTU

Motifs

Tissue expression

Fe	Fe	Fe	Fe	Ma	Ma	Ma

Mature sequence

Csc-Mir-10-P1r_5p

mirBase accession

None

Sequence

0- UACCCUGUAGAACCGAGUUUGU -22

Get sequence

Star sequence

Csc-Mir-10-P1r_3p*

mirBase accession

None

Sequence

39- AAAUUCGGUUCUAGAGUGGUUU -61

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