MirGeneDB ID | Cbr-Mir-10-P3m |
Family name |
MIR-10 (all species) |
Seed |
CCCUGAG |
Species |
Roundworm (Caenorhabditis briggsae) |
MiRBase ID |
cbr-lin-4
|
Paralogues |
Cbr-Mir-10-P1
Cbr-Mir-10-P2
Cbr-Mir-10-P3n
|
Orthologues |
Aae-Mir-10-P3
Asu-Mir-10-P3
Bfl-Mir-10-P3
Bge-Mir-10-P3
Bla-Mir-10-P3
Bpl-Mir-10-P3
Cel-Mir-10-P3m
Cgi-Mir-10-P3
Cin-Mir-10-P3
Cte-Mir-10-P3
Dan-Mir-10-P3
Dma-Mir-10-P3
Dme-Mir-10-P3
Dmo-Mir-10-P3
Dpu-Mir-10-P3
Dsi-Mir-10-P3
Dya-Mir-10-P3
Esc-Mir-10-P3
Isc-Mir-10-P3
Lan-Mir-10-P3
Lgi-Mir-10-P3
Nve-Mir-10
Obi-Mir-10-P3
Ovu-Mir-10-P3
Pmi-Mir-10-P3
Sko-Mir-10-P3
Spu-Mir-10-P3
Tca-Mir-10-P3
Xbo-Mir-10-P3
|
Node of Origin (locus) |
Caenorhabditis
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Node of Origin (family) |
Eumetazoa
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Genome context (CB4) |
II: 9816759-9816819 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUUUAUAUGUAUCAGAUGCUUUCGGCCUGUUCCCUGAGACCUCAAGUGUGAGCGUUCUGAACAUGCUUCACGCCUGGGCUCUCCGGGUACCAGGACGGUCUGAGCAGACACGUUUUUGGUG
Get precursor sequence
|
Structure | 10 20 30 40 50
GUUUAUAUGUAUCAGAUGCUU-- G UU-| U C A GCGUUCU
UCG CCUG CCC GAGA CUCA GUGUGA G
GGC GGAC GGG CUCU GGGU CGCACU A
GUGGUUUUUGCACAGACGAGUCU A CAU^ C C C UCGUACA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | UG at 5p(-14) |
Tissue expression
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Cb |
Ea |
Ma |
Yo |
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Mature sequence |
Cbr-Mir-10-P3m_5p |
mirBase accession | MIMAT0000464 |
Sequence |
0- UCCCUGAGACCUCAAGUGUGA -21
Get sequence
|
Star sequence |
Cbr-Mir-10-P3m_3p* |
mirBase accession | None |
Sequence |
39- ACGCCUGGGCUCUCCGGGUACC -61
Get sequence
|