MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-10-P3m

Family name MIR-10 (all species)
Seed CCCUGAG
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-lin-4
Paralogues Cel-Mir-10-P1  Cel-Mir-10-P2  Cel-Mir-10-P3n 
Orthologues Aae-Mir-10-P3  Adi-Mir-10  Aga-Mir-10-P3  Agr-Mir-10-P3  Asp-Mir-10  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bko-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Cbr-Mir-10-P3m  Cin-Mir-10-P3  Cte-Mir-10-P3  Dan-Mir-10-P3  Dlo-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dsi-Mir-10-P3  Dya-Mir-10-P3  Eba-Mir-10-P3  Egr-Mir-10-P3  Esc-Mir-10-P3  Gpa-Mir-10-P3  Gsa-Mir-10-P3  Gsp-Mir-10-P3  Hru-Mir-10-P3  Isc-Mir-10-P3  Lan-Mir-10-P3  Lgi-Mir-10-P3  Lhy-Mir-10-P3  Llo-Mir-10-P3  Mgi-Mir-10-P3  Mom-Mir-10-P3  Nag-Mir-10-P3-v1  Nag-Mir-10-P3-v2  Nve-Mir-10  Obi-Mir-10-P3  Ofu-Mir-10-P3  Ovu-Mir-10-P3  Pau-Mir-10-P3  Pca-Mir-10-P3  Pcr-Mir-10-P3  Pdu-Mir-10-P3  Ple-Mir-10-P3  Pmi-Mir-10-P3  Pve-Mir-10-P3  Rph-Mir-10-P3  Sko-Mir-10-P3  Snu-Mir-10-P3  Spu-Mir-10-P3  Tca-Mir-10-P3  War-Mir-10-P3  Xbo-Mir-10-P3 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Eumetazoa
Genome context
(ce11)		 chrII: 5902269-5902329 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGUUUAUGAGUUUAUGCUUCCGGCCUGUUCCCUGAGACCUCAAGUGUGAGUGUACUAUUGAUGCUUCACACCUGGGCUCUCCGGGUACCAGGACGGUUUGAGCAGAUCUUUUUUUCUGU
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Structure
        10        20          30         40        50         
UUGGUUUAUGAGUUUAUGCUU--   G    UU-|  U    C    A      GUGUACU 
                       CCG CCUG   CCC GAGA CUCA GUGUGA       A
                       GGC GGAC   GGG CUCU GGGU CACACU       U
UGUCUUUUUUUCUAGACGAGUUU   A    CAU^  C    C    C      UCGUAGU 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-10-P3m_5p
mirBase accessionMIMAT0000002
Sequence 
0- UCCCUGAGACCUCAAGUGUGA -21
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Proposed targets microrna.org: MIMAT0000002
TargetScanWorm: cel-lin-4
Star sequence

Cel-Mir-10-P3m_3p*
mirBase accessionMIMAT0015092
Sequence 
39- ACACCUGGGCUCUCCGGGUACC -61
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Proposed targets microrna.org: MIMAT0015092