MirGeneDB 2.1

MirGeneDB ID

Cbr-Mir-10-P3n

Family name MIR-10 (all species)
Seed CCCUGAG
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-237
Paralogues Cbr-Mir-10-P1  Cbr-Mir-10-P2  Cbr-Mir-10-P3m 
Orthologues Aae-Mir-10-P3  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Cel-Mir-10-P3n  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dpu-Mir-10-P3  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Isc-Mir-10-P3  Lan-Mir-10-P3  Lgi-Mir-10-P3  Nve-Mir-10  Obi-Mir-10-P3  Ovu-Mir-10-P3  Pmi-Mir-10-P3  Sko-Mir-10-P3  Spu-Mir-10-P3  Tca-Mir-10-P3  Xbo-Mir-10-P3 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Eumetazoa
Genome context
(CB4)
X: 16760725-16760783 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUUUAGUCUUGAAAACCAUGUUUGGUGGUCCCUGAGAAUGCUCCGACAUCUUCGAAGUAGCGUAGCUGUCGAGCACCAUUGGGGACCAGCGGAUUUUUGGUUAUAAUUUUUUUCAAG
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Structure
        10        20          30        40        50         
UUCUUUAGUCUUGAAAACCAU--|    G       UG GAA     C    U  UCGAA 
                       GUUUG UGGUCCC  A   UGCUC GACA CU     G
                       UAGGC ACCAGGG  U   ACGAG CUGU GA     U
GAACUUUUUUUAAUAUUGGUUUU^    G       GU ACC     -    C  UGCGA 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Mature sequence

Cbr-Mir-10-P3n_5p

mirBase accessionMIMAT0011479
Sequence
0- UCCCUGAGAAUGCUCCGACAUCU -23
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Star sequence

Cbr-Mir-10-P3n_3p*

mirBase accessionMIMAT0011480
Sequence
37- CUGUCGAGCACCAUUGGGGACC -59
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