MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-10-P3c

Family name MIR-10 (all species)
Seed CCCUGAG
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID
Paralogues Oan-Mir-10-P1b-v1  Oan-Mir-10-P1b-v2  Oan-Mir-10-P1c-v1  Oan-Mir-10-P1c-v2  Oan-Mir-10-P2b  Oan-Mir-10-P2c  Oan-Mir-10-P2d  Oan-Mir-10-P3b  Oan-Mir-10-P3d 
Orthologues Aae-Mir-10-P3  Aca-Mir-10-P3c  Ami-Mir-10-P3c  Asu-Mir-10-P3  Bfl-Mir-10-P3  Bge-Mir-10-P3  Bla-Mir-10-P3  Bpl-Mir-10-P3  Bta-Mir-10-P3c  Cfa-Mir-10-P3c  Cgi-Mir-10-P3  Cin-Mir-10-P3  Cli-Mir-10-P3c  Cpi-Mir-10-P3c  Cpo-Mir-10-P3c  Cte-Mir-10-P3  Dan-Mir-10-P3  Dma-Mir-10-P3  Dme-Mir-10-P3  Dmo-Mir-10-P3  Dno-Mir-10-P3c  Dpu-Mir-10-P3  Dre-Mir-10-P3c1  Dre-Mir-10-P3c2  Dsi-Mir-10-P3  Dya-Mir-10-P3  Esc-Mir-10-P3  Ete-Mir-10-P3c  Gga-Mir-10-P3c  Gja-Mir-10-P3c  Gmo-Mir-10-P3c2  Hsa-Mir-10-P3c  Isc-Mir-10-P3  Lan-Mir-10-P3  Lch-Mir-10-P3c  Lgi-Mir-10-P3  Loc-Mir-10-P3c  Mal-Mir-10-P3c2  Mdo-Mir-10-P3c  Mml-Mir-10-P3c  Mmu-Mir-10-P3c  Mun-Mir-10-P3c  Nve-Mir-10  Obi-Mir-10-P3  Ocu-Mir-10-P3c  Ovu-Mir-10-P3  Pbv-Mir-10-P3c  Pmi-Mir-10-P3  Rno-Mir-10-P3c  Sha-Mir-10-P3c  Sko-Mir-10-P3  Spt-Mir-10-P3c  Spu-Mir-10-P3  Sto-Mir-10-P3c  Tca-Mir-10-P3  Tgu-Mir-10-P3c  Xbo-Mir-10-P3  Xla-Mir-10-P3c3  Xla-Mir-10-P3c4  Xtr-Mir-10-P3c 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Eumetazoa
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041744.1: 19884780-19884841 [-]
Clustered miRNAs
(< 50kb from Mir-10-P3c)
Let-7-P1c NC_041744.1: 19915941-19916007 [-]
Mir-10-P2c NC_041744.1: 19916710-19916768 [-]
Precursor
(pre-Mir +30nt flank)
UUCUCCCCGAUCGGACUGGACUUUUCCUAGUCCCUGAGACCCUAACUUGUGAGGUUUUUGAGCAACGAUCACAAGUCAGGCUCUUGGGACCUAGGCGGAGUGGCCUCGUCGUCUCUGGGCCU
Get precursor sequence
Structure
        10          20        30        40        50        60
UUCUCCCCGAUCGGACUGG--|   UU     UC  UG   C   A        GGUUUUU 
                     ACUU  CCUAG  CC  AGA CCU ACUUGUGA       G
                     UGAG  GGAUC  GG  UCU GGA UGAACACU       A
UCCGGGUCUCUGCUGCUCCGG^   GC     CA  GU   C   C        AGCAACG 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-10-P3c_5p

mirBase accessionNone
Sequence
0- UCCCUGAGACCCUAACUUGUGA -22
Get sequence
Star sequence

Oan-Mir-10-P3c_3p*

mirBase accessionNone
Sequence
40- ACAAGUCAGGCUCUUGGGACCU -62
Get sequence