Mir-10-P3w

MirGeneDB ID

Ava-Mir-10-P3w

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Bdelloid rotifer (Adineta vaga)

MiRBase ID

Paralogues

Ava-Mir-10-P3v Ava-Mir-10-P4

Orthologues

Aae-Mir-10-P3 Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Cin-Mir-10-P3 Cte-Mir-10-P3 Dan-Mir-10-P3 Dgr-Mir-10-P3w Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Egr-Mir-10-P3 Esc-Mir-10-P3 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Isc-Mir-10-P3 Lan-Mir-10-P3 Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Mgi-Mir-10-P3 Mom-Mir-10-P3 Nag-Mir-10-P3-v1 Nag-Mir-10-P3-v2 Nve-Mir-10 Obi-Mir-10-P3 Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pau-Mir-10-P3 Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rph-Mir-10-P3 Sko-Mir-10-P3 Snu-Mir-10-P3 Spu-Mir-10-P3 Tca-Mir-10-P3 War-Mir-10-P3 Xbo-Mir-10-P3

Node of Origin (locus)

A. vaga

Node of Origin (family)

Eumetazoa

Genome context
(GCA_021613535.1_ASM2161353v1_AVA)

CP075497.1: 6598524-6598582 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GAUCAAAUUGUUAUAUAAUGUGAUGUAUUGACCCUGAGACCCUAACUUGAGACCGUUAAUGAUUAUCUCAGGUUUCGGUCUCCGGCUCGAUCAUCCAUUAUCAACGAAAACAUAAGAUA

Get precursor sequence

Structure

        10            20        30        40        50         
GAUCAAAUUGUUAUAUA----|  U    U     C  U      CU         CCGUUA 
                     AUG GAUG AUUGA CC GAGACC  AACUUGAGA      \
                     UAC CUAC UAGCU GG CUCUGG  UUGGACUCU      A
AUAGAAUACAAAAGCAACUAU^  -    -     C  C      CU         AUUAGU 
       110       100          90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

To	To

Mature sequence

Ava-Mir-10-P3w_5p

mirBase accession

None

Sequence

0- ACCCUGAGACCCUAACUUGAGA -22

Get sequence

Star sequence

Ava-Mir-10-P3w_3p*

mirBase accession

None

Sequence

37- UCAGGUUUCGGUCUCCGGCUCG -59

Get sequence