Mir-10-P3j1

MirGeneDB ID

Pfl-Mir-10-P3j1

Family name

MIR-10 (all species)

Seed

CCCUGAG

Species

Ptychodera (Ptychodera flava)

MiRBase ID

Paralogues

Pfl-Mir-10-P1 Pfl-Mir-10-P2 Pfl-Mir-10-P3j2 Pfl-Mir-10-P3k

Orthologues

Aae-Mir-10-P3 Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Cin-Mir-10-P3 Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Egr-Mir-10-P3 Esc-Mir-10-P3 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Isc-Mir-10-P3 Lan-Mir-10-P3 Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Mgi-Mir-10-P3 Mom-Mir-10-P3 Nag-Mir-10-P3-v1 Nag-Mir-10-P3-v2 Nve-Mir-10 Obi-Mir-10-P3 Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pau-Mir-10-P3 Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rph-Mir-10-P3 Sko-Mir-10-P3 Snu-Mir-10-P3 Spu-Mir-10-P3 Tca-Mir-10-P3 War-Mir-10-P3 Xbo-Mir-10-P3

Node of Origin (locus)

P. flava

Node of Origin (family)

Eumetazoa

Genome context
(Pfl)

LD348914.1: 17512-17570 [+]

Precursor
(pre-Mir +30nt flank)

ACCCACGAUACCGUUCAGUGUGCUCCCCGAUCCCUGAGACCCUAACUUGUGAUGUUACCCACAAUUCACAGGUUAGUUGCUCAGGUACUGGGUGGCAUAAAUGAGCUCCAAGACGUUUC

Get precursor sequence

Structure

        10          20        30        40        50         
ACCCACGAUACCGUUCAG--|    UC    AUC      ACC           UGUUAC 
                    UGUGC  CCCG   CCUGAG   CUAACUUGUGA      \
                    AUACG  GGGU   GGACUC   GAUUGGACACU      C
CUUUGCAGAACCUCGAGUAA^    GU    CAU      GUU           UAACAC 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Pfl-Mir-10-P3j1_5p

mirBase accession

None

Sequence

0- UCCCUGAGACCCUAACUUGUGA -22

Get sequence

Star sequence

Pfl-Mir-10-P3j1_3p*

mirBase accession

None

Sequence

37- ACAGGUUAGUUGCUCAGGUACU -59

Get sequence