Mir-10-P3k

MirGeneDB ID

Pfl-Mir-10-P3k

Family name

MIR-10 (all species)

Seed

CAGGUUA

Species

Ptychodera (Ptychodera flava)

MiRBase ID

Paralogues

Pfl-Mir-10-P1 Pfl-Mir-10-P2 Pfl-Mir-10-P3j1 Pfl-Mir-10-P3j2

Orthologues

Aae-Mir-10-P3 Adi-Mir-10 Aga-Mir-10-P3 Agr-Mir-10-P3 Asp-Mir-10 Asu-Mir-10-P3 Bfl-Mir-10-P3 Bge-Mir-10-P3 Bko-Mir-10-P3 Bla-Mir-10-P3 Bpl-Mir-10-P3 Cin-Mir-10-P3 Cte-Mir-10-P3 Dan-Mir-10-P3 Dlo-Mir-10-P3 Dma-Mir-10-P3 Dme-Mir-10-P3 Dmo-Mir-10-P3 Dpu-Mir-10-P3 Dsi-Mir-10-P3 Dya-Mir-10-P3 Eba-Mir-10-P3 Egr-Mir-10-P3 Esc-Mir-10-P3 Gpa-Mir-10-P3 Gsa-Mir-10-P3 Gsp-Mir-10-P3 Hru-Mir-10-P3 Isc-Mir-10-P3 Lan-Mir-10-P3 Lgi-Mir-10-P3 Lhy-Mir-10-P3 Llo-Mir-10-P3 Mgi-Mir-10-P3 Mom-Mir-10-P3 Nag-Mir-10-P3-v1 Nag-Mir-10-P3-v2 Nve-Mir-10 Obi-Mir-10-P3 Ofu-Mir-10-P3 Ovu-Mir-10-P3 Pau-Mir-10-P3 Pca-Mir-10-P3 Pcr-Mir-10-P3 Pdu-Mir-10-P3 Ple-Mir-10-P3 Pmi-Mir-10-P3 Pve-Mir-10-P3 Rph-Mir-10-P3 Sko-Mir-10-P3 Snu-Mir-10-P3 Spu-Mir-10-P3 Tca-Mir-10-P3 War-Mir-10-P3 Xbo-Mir-10-P3

Node of Origin (locus)

P. flava

Node of Origin (family)

Eumetazoa

Genome context
(Pfl)

LD350399.1: 124091-124151 [+]

Precursor
(pre-Mir +30nt flank)

UUACCCACGAUACCCCAGUGCGCUUCUCGAUCCCUGAGACCCUAACUUUGGAUGUCAACUAUUUAAUUCACAGGUUAGUUGCUCAGGUACUGGGUGGCAUAUAUGAGCUGCAGGAAGCUUC

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Structure

        10        20          30        40         50         
UUACCCACGAUACCCCAGUGC--   U    AUC      ACC       -|   UGUCAA 
                       GCU CUCG   CCUGAG   CUAACUU UGGA      C
                       CGG GGGU   GGACUC   GAUUGGA ACUU      U
CUUCGAAGGACGUCGAGUAUAUA   U    CAU      GUU       C^   AAUUUA 
 .       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Pfl-Mir-10-P3k_5p* (predicted)

mirBase accession

None

Sequence

0- UCCCUGAGACCCUAACUUUGGA -22

Get sequence

Mature sequence

Pfl-Mir-10-P3k_3p

mirBase accession

None

Sequence

39- ACAGGUUAGUUGCUCAGGUACU -61

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