MirGeneDB ID | Ofu-Mir-10-P6 |
Family name |
MIR-10 (all species) |
Seed |
UUACCCU |
Species |
Tubeworm (Owenia fusiformis) |
MiRBase ID |
|
Paralogues |
Ofu-Mir-10-P1
Ofu-Mir-10-P2
Ofu-Mir-10-P3
Ofu-Mir-10-P4
Ofu-Mir-10-P5
Ofu-Mir-10-P7
|
Orthologues |
Adi-Mir-10
Agr-Mir-10-P6
Asp-Mir-10
Cte-Mir-10-P6
Eba-Mir-10-P6
Efe-Mir-10-P6
Esc-Mir-10-P6
Hru-Mir-10-P6
Lgi-Mir-10-P6
Lhy-Mir-10-P6
Mgi-Mir-10-P6
Mom-Mir-10-P6
Npo-Mir-10-P6
Nve-Mir-10
Obi-Mir-10-P6
Ovu-Mir-10-P6
Pve-Mir-10-P6
Rph-Mir-10-P6
War-Mir-10-P6
|
Node of Origin (locus) |
Neotrochozoa
|
Node of Origin (family) |
Eumetazoa
|
Genome context (GCA_903813345.2_Owenia) |
CAIIXF020000001.1: 17943429-17943488 [+]
|
Precursor (pre-Mir +30nt flank) |
UAUAUUUUCUGGAUUCUCUGAAGUCUUGUCUUUACCCUGUAAAUCGAGAUUGUGUCGCAUUUUAUCACUUCUCAUUUCACAGGGUAAAUACAAAACUCAGUUUUUGCUUCAAAUCAAACC
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUAUUUUCUGGAUUCU---| A C C - C UU UCGCA
CUGA GU UUGU UUUACCCUGU AAAU GAGA GUG \
GACU CA AACA AAAUGGGACA UUUA CUCU CAC U
CCAAACUAAACUUCGUUUUU^ - A U C - U- UAUUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ofu-Mir-10-P6_5p |
mirBase accession | None |
Sequence |
0- UUUACCCUGUAAAUCGAGAUUGUG -24
Get sequence
|
Star sequence |
Ofu-Mir-10-P6_3p* |
mirBase accession | None |
Sequence |
37- CUUCUCAUUUCACAGGGUAAAUA -60
Get sequence
|