MirGeneDB ID | Ovu-Mir-10-P6 |
Family name |
MIR-10 (all species) |
Seed |
UUACCCU |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
|
Paralogues |
Ovu-Mir-10-P2
Ovu-Mir-10-P3
|
Orthologues |
Adi-Mir-10
Agr-Mir-10-P6
Asp-Mir-10
Cte-Mir-10-P6
Eba-Mir-10-P6
Efe-Mir-10-P6
Esc-Mir-10-P6
Hru-Mir-10-P6
Lgi-Mir-10-P6
Lhy-Mir-10-P6
Mgi-Mir-10-P6
Mom-Mir-10-P6
Npo-Mir-10-P6
Nve-Mir-10
Obi-Mir-10-P6
Ofu-Mir-10-P6
Pve-Mir-10-P6
Rph-Mir-10-P6
War-Mir-10-P6
|
Node of Origin (locus) |
Neotrochozoa
|
Node of Origin (family) |
Eumetazoa
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01017394.1: 10789-10849 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCUCACGCAGACAUAUGCUGAAGGAUUAACUUACCCUGUCAAUCGGAGAAGUUUAUAUUCAACCUUGCUUCUCGUUUCACAGGGUAUAUUCAUCUUUUGGCAAAAAACAGCAUAGUACAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACCUCACGCAGACAUAU--| UG U CU C UCG UUAUAU
GC AAGGAU AA UACCCUGU AA GAGAAGU U
CG UUUCUA UU AUGGGACA UU CUCUUCG C
GACAUGAUACGACAAAAAA^ GU C AU C UG- UUCCAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
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Mature sequence |
Ovu-Mir-10-P6_5p |
mirBase accession | None |
Sequence |
0- CUUACCCUGUCAAUCGGAGAAGU -23
Get sequence
|
Star sequence |
Ovu-Mir-10-P6_3p* |
mirBase accession | None |
Sequence |
39- UUCUCGUUUCACAGGGUAUAUU -61
Get sequence
|