MirGeneDB ID | Agr-Mir-10-P6 |
Family name |
MIR-10 (all species) |
Seed |
UUACCCU |
Species |
West Indian fuzzy chiton (Acanthopleura granulata ) |
MiRBase ID |
|
Paralogues |
Agr-Mir-10-P1
Agr-Mir-10-P2
Agr-Mir-10-P3
Agr-Mir-10-P5
|
Orthologues |
Adi-Mir-10
Asp-Mir-10
Cte-Mir-10-P6
Eba-Mir-10-P6
Efe-Mir-10-P6
Esc-Mir-10-P6
Hru-Mir-10-P6
Lgi-Mir-10-P6
Lhy-Mir-10-P6
Mgi-Mir-10-P6
Mom-Mir-10-P6
Npo-Mir-10-P6
Nve-Mir-10
Obi-Mir-10-P6
Ofu-Mir-10-P6
Ovu-Mir-10-P6
Pve-Mir-10-P6
Rph-Mir-10-P6
War-Mir-10-P6
|
Node of Origin (locus) |
Neotrochozoa
|
Node of Origin (family) |
Eumetazoa
|
Genome context (GCA_016165875.1_ASM1616587v1_Acanthopleura_granula) |
JABBOT010000003.1: 19975621-19975680 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GACGAGUGGAAAACCUAACCUGCCAGCCAACUUACCCUGUAAAUCGAAGAAAGUCGACUAUGUACAACUUCUCGUUUCACAGGGUAUAUUUGUUGUCGGGUACAAUCUGCCAGUUGUAUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GACGAGUGGAAAACCUA--| C C CU A U A A CGACU
ACCUG CAGC AA UACCCUGU AA CGA GAA GU A
UGGGC GUUG UU AUGGGACA UU GCU CUU CA U
UUAUGUUGACCGUCUAACA^ U U AU C U - - ACAUG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Agr-Mir-10-P6_5p |
mirBase accession | None |
Sequence |
0- CUUACCCUGUAAAUCGAAGAAAGU -24
Get sequence
|
Star sequence |
Agr-Mir-10-P6_3p* |
mirBase accession | None |
Sequence |
38- UUCUCGUUUCACAGGGUAUAUU -60
Get sequence
|