| MirGeneDB ID | Rph-Bantam-P21 |
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| Family name |
BANTAM (all species) |
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| Seed |
GAGAUCA |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
Rph-Bantam-P22
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| Orthologues |
Aae-Bantam
Aga-Bantam
Agr-Bantam
Bge-Bantam
Bko-Bantam
Bpl-Bantam
Cte-Bantam
Dan-Bantam
Dgr-Bantam
Dlo-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Eba-Bantam
Esc-Bantam
Gpa-Bantam
Gsa-Bantam
Gsp-Bantam
Hme-Bantam
Hru-Bantam
Lan-Bantam
Lgi-Bantam
Lhy-Bantam
Llo-Bantam
Mgi-Bantam
Mom-Bantam
Nag-Bantam
Npo-Bantam
Ofu-Bantam
Ovu-Bantam
Pau-Bantam
Pcr-Bantam
Ple-Bantam
Pve-Bantam
Sma-Bantam
Sne-Bantam
Snu-Bantam
Tca-Bantam
Tur-Bantam
War-Bantam
|
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| Node of Origin (locus) |
R. philippinarum
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(Ruditapes_GCA_009026015) |
CM018540.1: 15041974-15042034 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
AGGAUUAUUUUGUUUUCAUGCCUGACGAUUCCGGUUUUCAUUCUGGUCUGACAGGUUUAUAUAUUAUCUGAGAUCAUUUUGAAAACUGAUAUUGUCACAUGACUUGACAGCGCUUGUGGAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AGGAUUAUUUUGUUUUC----| CC UC UUC GA UUUAU
AUG UGACGAU CGGUUUUCA UGGUCU CAGG \
UAC ACUGUUA GUCAAAAGU ACUAGA GUCU A
GAGGUGUUCGCGACAGUUCAG^ -- UA UUU -- AUUAU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Star sequence |
Rph-Bantam-P21_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CCGGUUUUCAUUCUGGUCUGACAGG -25
Get sequence
|
|---|
| Mature sequence |
Rph-Bantam-P21_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UGAGAUCAUUUUGAAAACUGAUA -61
Get sequence
|
|---|
