MirGeneDB 3.0
MirGeneDB ID

Ple-Bantam

Family name BANTAM (all species)
Seed GAGAUCA
Species Thorny-headed worm 2 (Pomphorhynchus laevis)
MiRBase ID
Paralogues
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Asu-Bantam-o1  Asu-Bantam-o2  Asu-Bantam-o3  Ava-Bantam-P23  Ava-Bantam-P24  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cbr-Bantam-P1a  Cbr-Bantam-P1b  Cbr-Bantam-P2  Cbr-Bantam-P3  Cbr-Bantam-P4  Cel-Bantam-P1  Cel-Bantam-P2  Cel-Bantam-P3  Cel-Bantam-P4  Cel-Bantam-P5a  Cel-Bantam-P5b  Cel-Bantam-P5c  Csc-Bantam-P16  Csc-Bantam-P17  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Efe-Bantam-P6  Efe-Bantam-P7  Efe-Bantam-P8  Egr-Bantam-P27  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Isc-Bantam-P9a  Isc-Bantam-P9b  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Lpo-Bantam-P10  Lpo-Bantam-P11  Lpo-Bantam-P12  Lpo-Bantam-P13  Lpo-Bantam-P14  Lpo-Bantam-P15  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Pdu-Bantam-P25  Pdu-Bantam-P26  Pve-Bantam  Rph-Bantam-P21  Rph-Bantam-P22  Sma-Bantam  Sme-Bantam-P18  Sme-Bantam-P19  Sme-Bantam-P20  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_012934845.2_ASM1293484v2_PLE_genomic)		 WNNJ02000695.1: 29898-29953 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUACUUCCCAAAACUAGAAUGUUAGUCAAUUGGCUUAUUUCAUGUCCUUGCAAUGUCAGUAAUGUGAGAUCAUGAACAAAGCCAGUUGAUAAUUUCUAACGCCACUUACUCAGUAU
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Structure
        10        20          30        40        50       
AUACUUCCCAAAACUAGAAUGUUA--|           AU      UC  UG  AUGU 
                          GUCAAUUGGCUU  UUCAUG  CU  CA    C
                          UAGUUGACCGAA  AAGUAC  GA  GU    A
UAUGACUCAUUCACCGCAAUCUUUAA^           AC      UA  GU  AAUG 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Pl Pl Pl
Star sequence

Ple-Bantam_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGGCUUAUUUCAUGUCCUUGCA -22
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Mature sequence

Ple-Bantam_3p
mirBase accessionNone
Sequence 
34- UGAGAUCAUGAACAAAGCCAGU -56
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