MirGeneDB ID | Cbr-Bantam-P1a |
Family name |
BANTAM (all species) |
Seed |
GAGAUCG |
Species |
Roundworm (Caenorhabditis briggsae) |
MiRBase ID |
cbr-mir-58a
|
Paralogues |
Cbr-Bantam-P1b
Cbr-Bantam-P2
Cbr-Bantam-P3
Cbr-Bantam-P4
|
Orthologues |
Aae-Bantam
Asu-Bantam-o1
Bge-Bantam
Bpl-Bantam
Cel-Bantam-P1
Cgi-Bantam
Cte-Bantam
Dan-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Esc-Bantam
Hme-Bantam
Lan-Bantam
Lgi-Bantam
Npo-Bantam
Ovu-Bantam
Tca-Bantam
|
Node of Origin (locus) |
C. briggsae
|
Node of Origin (family) |
Protostomia
|
Genome context (CB4) |
IV: 9605767-9605840 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCGAACCCGUUUGAUGCUCGCCAUAUCCAUUGCCCUACUAUUCGCAUCUCAUCACUCCAGUAUAUAUAUAUAUAUAUAAGGAUGAGAUCGUUCAGUACGGCAAUGGAAAGAGCUAAACGACGGUUGUUUGGCCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCGAACCCGUUUGAUGCUC--| CAUA C AUU C ACUCCAGUAUAUA
GC UCCAUUGCC UACU CG AUCUCAUC \
CG AGGUAACGG AUGA GC UAGAGUAG U
UCCGGUUUGUUGGCAGCAAAU^ AGAA C CUU - GAAUAUAUAUAUA
130 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut +1 on both arms. |
3' NTU |
No
|
Motifs | No |
Tissue expression
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01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
15 |
16 |
Cb |
Ea |
Ma |
Yo |
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Star sequence |
Cbr-Bantam-P1a_5p* |
mirBase accession | None |
Sequence |
0- UGCCCUACUAUUCGCAUCUCAUC -23
Get sequence
|
Mature sequence |
Cbr-Bantam-P1a_3p |
mirBase accession | MIMAT0000478 |
Sequence |
52- UGAGAUCGUUCAGUACGGCAAU -74
Get sequence
|