MirGeneDB 2.1

MirGeneDB ID

Cbr-Bantam-P1a

Family name BANTAM (all species)
Seed GAGAUCG
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-58a
Paralogues Cbr-Bantam-P1b  Cbr-Bantam-P2  Cbr-Bantam-P3  Cbr-Bantam-P4 
Orthologues Aae-Bantam  Asu-Bantam-o1  Bge-Bantam  Bpl-Bantam  Cel-Bantam-P1  Cgi-Bantam  Cte-Bantam  Dan-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Esc-Bantam  Hme-Bantam  Lan-Bantam  Lgi-Bantam  Npo-Bantam  Ovu-Bantam  Tca-Bantam 
Node of Origin (locus) C. briggsae
Node of Origin (family) Protostomia
Genome context
(CB4)
IV: 9605767-9605840 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GCGAACCCGUUUGAUGCUCGCCAUAUCCAUUGCCCUACUAUUCGCAUCUCAUCACUCCAGUAUAUAUAUAUAUAUAUAAGGAUGAGAUCGUUCAGUACGGCAAUGGAAAGAGCUAAACGACGGUUGUUUGGCCU
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Structure
        10          20        30        40        50        60       
GCGAACCCGUUUGAUGCUC--| CAUA         C    AUU  C        ACUCCAGUAUAUA 
                     GC    UCCAUUGCC UACU   CG AUCUCAUC             \
                     CG    AGGUAACGG AUGA   GC UAGAGUAG             U
UCCGGUUUGUUGGCAGCAAAU^ AGAA         C    CUU  -        GAAUAUAUAUAUA 
  130       120       110       100        90         80        70
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Bantam-P1a_5p*

mirBase accessionNone
Sequence
0- UGCCCUACUAUUCGCAUCUCAUC -23
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Mature sequence

Cbr-Bantam-P1a_3p

mirBase accessionMIMAT0000478
Sequence
52- UGAGAUCGUUCAGUACGGCAAU -74
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