MirGeneDB 2.1
MirGeneDB ID

Cbr-Bantam-P2

Family name BANTAM (all species)
Seed GAGAUCA
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-80
Paralogues Cbr-Bantam-P1a  Cbr-Bantam-P1b  Cbr-Bantam-P3  Cbr-Bantam-P4 
Orthologues Aae-Bantam  Asu-Bantam-o2  Bge-Bantam  Bpl-Bantam  Cel-Bantam-P2  Cgi-Bantam  Cte-Bantam  Dan-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Esc-Bantam  Hme-Bantam  Lan-Bantam  Lgi-Bantam  Npo-Bantam  Ovu-Bantam  Tca-Bantam 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(CB4)		 III: 14440888-14440953 [-] Ensembl
Clustered miRNAs
(< 50kb from Bantam-P2)		 Bantam-P2 III: 14440888-14440953 [-] Ensembl
Mir-238 III: 14445088-14445154 [-] Ensembl
Mir-90-P1 III: 14455369-14455431 [+] Ensembl
Mir-90-P2 III: 14456991-14457056 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UACCCUCUCUACUUGGACACUCUUUCGCUCAGCUUUCGACAUGAUUCUAAACAAUACGCUGUCGCAAUGUUGUUGAGAUCAUUAGUUGAAAGCCGAACGAUUCGAGAUAUCCAAUUUAAUAAGAAC
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Structure
        10         20         30        40          50        60  
UACCCUCUCUACUUGGACA-   UU-   C  A         --|    U  A   AAUACGCUG 
                    CUC   UCG UC GCUUUCGAC  AUGAU CU AAC         \
                    GAG   AGC AG CGAAAGUUG  UACUA GA UUG         U
CAAGAAUAAUUUAACCUAUA   CUU   A  C         AU^    -  G   UUGUAACGC 
    120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Bantam-P2_5p*
mirBase accessionNone
Sequence 
0- AGCUUUCGACAUGAUUCUAAAC -22
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Mature sequence

Cbr-Bantam-P2_3p
mirBase accessionMIMAT0000487
Sequence 
43- UGAGAUCAUUAGUUGAAAGCCGA -66
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