Bantam

MirGeneDB ID

Sma-Bantam

Family name

BANTAM (all species)

Seed

GAGAUCG

Species

Blood fluke (Schistosoma mansoni)

MiRBase ID

sma-bantam

Paralogues

Orthologues

Aae-Bantam Aga-Bantam Agr-Bantam Asu-Bantam-o1 Asu-Bantam-o2 Asu-Bantam-o3 Ava-Bantam-P23 Ava-Bantam-P24 Bge-Bantam Bko-Bantam Bpl-Bantam Cbr-Bantam-P1a Cbr-Bantam-P1b Cbr-Bantam-P2 Cbr-Bantam-P3 Cbr-Bantam-P4 Cel-Bantam-P1 Cel-Bantam-P2 Cel-Bantam-P3 Cel-Bantam-P4 Cel-Bantam-P5a Cel-Bantam-P5b Cel-Bantam-P5c Csc-Bantam-P16 Csc-Bantam-P17 Cte-Bantam Dan-Bantam Dgr-Bantam Dlo-Bantam Dma-Bantam Dme-Bantam Dmo-Bantam Dpu-Bantam Dsi-Bantam Dya-Bantam Eba-Bantam Efe-Bantam-P6 Efe-Bantam-P7 Efe-Bantam-P8 Egr-Bantam-P27 Esc-Bantam Gpa-Bantam Gsa-Bantam Gsp-Bantam Hme-Bantam Hru-Bantam Isc-Bantam-P9a Isc-Bantam-P9b Lan-Bantam Lgi-Bantam Lhy-Bantam Llo-Bantam Lpo-Bantam-P10 Lpo-Bantam-P11 Lpo-Bantam-P12 Lpo-Bantam-P13 Lpo-Bantam-P14 Lpo-Bantam-P15 Mgi-Bantam Mom-Bantam Nag-Bantam Npo-Bantam Ofu-Bantam Ovu-Bantam Pau-Bantam Pcr-Bantam Pdu-Bantam-P25 Pdu-Bantam-P26 Ple-Bantam Pve-Bantam Rph-Bantam-P21 Rph-Bantam-P22 Sme-Bantam-P18 Sme-Bantam-P19 Sme-Bantam-P20 Sne-Bantam Snu-Bantam Tca-Bantam Tur-Bantam War-Bantam

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(GCA_000237925.5_SM_V9_genomic)

HE601629.3: 13296245-13296303 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAGUUGCAUUAAACUUUCAGAUCGGCAAGUCGGCUUUUAUUGCGCUCUGAGAAAAUUUAUUGUCAUCUGAGAUCGCGAUUAAAGCUGGUUUUCCAUUUGUGAGCAACAAUCUUGAUAUU

Get precursor sequence

Structure

        10           20        30        40        50         
UAGUUGCAUUAAACUUU---|    C  C  GU       U      C   G   AAAUUU 
                    CAGAU GG AA  CGGCUUU AUUGCG UCU AGA      \
                    GUUUA CC UU  GUCGAAA UAGCGC AGA UCU      A
UUAUAGUUCUAACAACGAGU^    -  U  UG       U      U   G   ACUGUU 
       110       100         90        80        70        60