MirGeneDB 2.1

MirGeneDB ID

Efe-Bantam-P7

Family name BANTAM (all species)
Seed GAGAUCA
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Bantam-P6  Efe-Bantam-P8 
Orthologues Aae-Bantam  Bge-Bantam  Bpl-Bantam  Cgi-Bantam  Cte-Bantam  Dan-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Esc-Bantam  Hme-Bantam  Lan-Bantam  Lgi-Bantam  Npo-Bantam  Ovu-Bantam  Tca-Bantam 
Node of Origin (locus) E. fetida
Node of Origin (family) Protostomia
Genome context
(Efe_combined)
Efet.01.127987: 1361-1420 [-]
Precursor
(pre-Mir +30nt flank)
GAGGAGGAGGGAGCAGCCAUUGAGACGGAACUGGUUUUCUCAUUGGUCAUCUGGAAUUAAGAACUUCUGAGAUCAGCGUGAAAACCAAUUCCGUCAUUUCGUCGUCAUUGAGUCUUCGCU
Get precursor sequence
Structure
        10        20          30        40        50        60
GAGGAGGAGGGAGCAGCCAUUGA--|      C        UCA      A  U  AAUUA 
                         GACGGAA UGGUUUUC   UUGGUC UC GG     A
                         CUGCCUU ACCAAAAG   GACUAG AG UC     G
UCGCUUCUGAGUUACUGCUGCUUUA^      A        UGC      -  -  UUCAA 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Efe-Bantam-P7_5p*

mirBase accessionNone
Sequence
0- CUGGUUUUCUCAUUGGUCAUCUGG -24
Get sequence
Mature sequence

Efe-Bantam-P7_3p

mirBase accessionNone
Sequence
37- UGAGAUCAGCGUGAAAACCAAUU -60
Get sequence