MirGeneDB 2.1

MirGeneDB ID

Tca-Bantam

Family name BANTAM (all species)
Seed GAGAUCA
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-bantam
Paralogues
Orthologues Aae-Bantam  Asu-Bantam-o1  Asu-Bantam-o2  Asu-Bantam-o3  Bge-Bantam  Bpl-Bantam  Cbr-Bantam-P1a  Cbr-Bantam-P1b  Cbr-Bantam-P2  Cbr-Bantam-P3  Cbr-Bantam-P4  Cel-Bantam-P1  Cel-Bantam-P2  Cel-Bantam-P3  Cel-Bantam-P4  Cel-Bantam-P5a  Cel-Bantam-P5b  Cel-Bantam-P5c  Cgi-Bantam  Csc-Bantam-P16  Csc-Bantam-P17  Cte-Bantam  Dan-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Efe-Bantam-P6  Efe-Bantam-P7  Efe-Bantam-P8  Esc-Bantam  Hme-Bantam  Isc-Bantam-P9a  Isc-Bantam-P9b  Lan-Bantam  Lgi-Bantam  Lpo-Bantam-P10  Lpo-Bantam-P11  Lpo-Bantam-P12  Lpo-Bantam-P13  Lpo-Bantam-P14  Lpo-Bantam-P15  Npo-Bantam  Ovu-Bantam  Sme-Bantam-P18  Sme-Bantam-P19  Sme-Bantam-P20 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(Tcas5.2)
LG3: 16990366-16990425 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CCUCGUCACGGCGACGUCAGCGAGACGAAACUGGUUUUCACAGUGAUUUGACAGAUAUAUUUGAUUCUGAGAUCAUUGUGAAAGCUGAUUUUGUUCAUUAAUCAUCGAUCGCAGGCAGCA
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Structure
        10        20           30        40        50        60
CCUCGUCACGGCGACGUCAGC---|  A     CU                 GA    UAUA 
                        GAG CGAAA  GGUUUUCACAGUGAUUU  CAGA    U
                        CUU GUUUU  UCGAAAGUGUUACUAGA  GUCU    U
ACGACGGACGCUAGCUACUAAUUA^  -     AG                 --    UAGU 
.       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Bantam_5p*

mirBase accessionMIMAT0019178
Sequence
0- CUGGUUUUCACAGUGAUUUGACAGA -25
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Mature sequence

Tca-Bantam_3p

mirBase accessionMIMAT0010091
Sequence
37- UGAGAUCAUUGUGAAAGCUGAUU -60
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