MirGeneDB 3.0

MirGeneDB ID

Cel-Bantam-P2

Family name BANTAM (all species)
Seed GAGAUCA
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-80
Paralogues Cel-Bantam-P1  Cel-Bantam-P3  Cel-Bantam-P4  Cel-Bantam-P5a  Cel-Bantam-P5b  Cel-Bantam-P5c 
Orthologues Aae-Bantam  Aga-Bantam  Agr-Bantam  Asu-Bantam-o2  Bge-Bantam  Bko-Bantam  Bpl-Bantam  Cbr-Bantam-P2  Cte-Bantam  Dan-Bantam  Dgr-Bantam  Dlo-Bantam  Dma-Bantam  Dme-Bantam  Dmo-Bantam  Dpu-Bantam  Dsi-Bantam  Dya-Bantam  Eba-Bantam  Esc-Bantam  Gpa-Bantam  Gsa-Bantam  Gsp-Bantam  Hme-Bantam  Hru-Bantam  Lan-Bantam  Lgi-Bantam  Lhy-Bantam  Llo-Bantam  Mgi-Bantam  Mom-Bantam  Nag-Bantam  Npo-Bantam  Ofu-Bantam  Ovu-Bantam  Pau-Bantam  Pcr-Bantam  Ple-Bantam  Pve-Bantam  Sma-Bantam  Sne-Bantam  Snu-Bantam  Tca-Bantam  Tur-Bantam  War-Bantam 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Protostomia
Genome context
(ce11)
chrIII: 8865285-8865349 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Bantam-P2)
Bantam-P2 chrIII: 8865285-8865349 [-] UCSC Ensembl
Mir-238 chrIII: 8867343-8867410 [-] UCSC Ensembl
Mir-90 chrIII: 8874001-8874069 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUCCUUUUUCAAUGGACACUCGUUCGCUCAGCUUUCGACAUGAUUCUGAACAAUCCGCAAGCCCAUGUUGUUGAGAUCAUUAGUUGAAAGCCGAAUGAUCAGAGAUAUCCACAUUCACAACCUG
Get precursor sequence
Structure
        10         20         30        40          50        60 
AUUCCUUUUUCAAUGGACA-   GU-   C  A         --|    U  G   AAUCCGCA 
                    CUC   UCG UC GCUUUCGAC  AUGAU CU AAC        A
                    GAG   AGU AG CGAAAGUUG  UACUA GA UUG        G
GUCCAACACUUACACCUAUA   ACU   A  C         AU^    -  G   UUGUACCC 
   120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Bantam-P2_5p*

mirBase accessionMIMAT0000052
Sequence
0- AGCUUUCGACAUGAUUCUGAAC -22
Get sequence
Proposed targets microrna.org: MIMAT0000052
TargetScanWorm: cel-miR-227
Mature sequence

Cel-Bantam-P2_3p

mirBase accessionMIMAT0000053
Sequence
42- UGAGAUCAUUAGUUGAAAGCCGA -65
Get sequence
Proposed targets microrna.org: MIMAT0000053
TargetScanWorm: cel-miR-80