MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-90

Family name MIR-90 (all species)
Seed GAUAUGU
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-90
Paralogues
Orthologues Cbr-Mir-90-P1  Cbr-Mir-90-P2 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(ce11)		 chrIII: 8874001-8874069 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-90)		 Bantam-P2 chrIII: 8865285-8865349 [-] UCSC Ensembl
Mir-238 chrIII: 8867343-8867410 [-] UCSC Ensembl
Mir-90 chrIII: 8874001-8874069 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUUUCUAACAAAACGGGCGCCAUUUCGAGCGGCUUUCAACGACGAUAUCAACCGACAACUCACACUUUUGCGUGUUGAUAUGUUGUUUGAAUGCCCCUUGAAUUGGAUGCCACAGGUUUUCUUUUAUU
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Structure
        10         20         30         40        50        60    
CAUUUCUAACAAAACGG-   -   U      C   U   -|     G        CGACAACUCA 
                  GCG CCA UUCGAG GGC UUC AACGAC AUAUCAAC          \
                  CGU GGU AAGUUC CCG AAG UUGUUG UAUAGUUG          C
UUAUUUUCUUUUGGACAC   A   U      C   U   U^     -        UGCGUUUUCA 
       120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-90_5p*
mirBase accessionMIMAT0020326
Sequence 
0- CGGCUUUCAACGACGAUAUCAAC -23
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Mature sequence

Cel-Mir-90_3p
mirBase accessionMIMAT0000061
Sequence 
46- UGAUAUGUUGUUUGAAUGCCCCU -69
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Proposed targets microrna.org: MIMAT0000061
TargetScanWorm: cel-miR-90