MirGeneDB 3.0
MirGeneDB ID

Cel-Mir-238

Family name MIR-238 (all species)
Seed UUGUACU
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-238
Paralogues
Orthologues Cbr-Mir-238 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(ce11)		 chrIII: 8867343-8867410 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-238)		 Bantam-P2 chrIII: 8865285-8865349 [-] UCSC Ensembl
Mir-238 chrIII: 8867343-8867410 [-] UCSC Ensembl
Mir-90 chrIII: 8874001-8874069 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGAAAAUGGCAAUUCUCCAUUGACUGUUUGGAUGUUCUCGGACGUUCAAAGCUACAUCCAACAAAUUGGUAGCUUUGUACUCCGAUGCCAUUCAGAUAGUUAUGAGCCAUGGAUGUAUUGUUGAGG
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Structure
        10           20        30        40        50        60    
CAAGAAAAUGGCAAUUCUC---|  U             UUC     C  U      UACAUCCAA 
                      CAU GACUGUUUGGAUG   UCGGA GU CAAAGC         \
                      GUA UUGAUAGACUUAC   AGCCU CA GUUUCG         C
GGAGUUGUUAUGUAGGUACCGA^  -             CGU     -  U      AUGGUUAAA 
      120       110        100        90         80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-238_5p*
mirBase accessionMIMAT0015114
Sequence 
0- UGGAUGUUCUCGGACGUUCAAAGC -24
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Proposed targets microrna.org: MIMAT0015114
Mature sequence

Cel-Mir-238_3p
mirBase accessionMIMAT0000293
Sequence 
45- UUUGUACUCCGAUGCCAUUCAGA -68
Get sequence
Proposed targets microrna.org: MIMAT0000293
TargetScanWorm: cel-miR-238