MirGeneDB 2.1

MirGeneDB ID

Cbr-Mir-238

Family name MIR-238 (all species)
Seed UUGUACU
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-238
Paralogues
Orthologues Cel-Mir-238 
Node of Origin (locus) Caenorhabditis
Node of Origin (family) Caenorhabditis
Genome context
(CB4)
III: 14445088-14445154 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-238)
Bantam-P2 III: 14440888-14440953 [-] Ensembl
Mir-238 III: 14445088-14445154 [-] Ensembl
Mir-90-P1 III: 14455369-14455431 [+] Ensembl
Mir-90-P2 III: 14456991-14457056 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCUUCUUAUCCUCAUGAAUAUGACUGUUUGGGUGUCCUUGGAUGUAAAAAGCUAUAAAUCUGUUAAGAUUGCUUUGUACUCCGAUGCCAUCCACAUGGUCUGACGACAAGAAGAUAUGGAAAUAC
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Structure
        10        20          30        40        50        60   
CUUCUUCUUAUCCUCAUGAAUAU--|     U      UCC     U   A     UAUAAAUC 
                         GACUGU UGGGUG   UUGGA GUA AAAGC        U
                         CUGGUA ACCUAC   AGCCU CAU UUUCG        G
CAUAAAGGUAUAGAAGAACAGCAGU^     C      CGU     -   G     UUAGAAUU 
     120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
01 02 03 04 05 06 07 08 09 10 11 12 13 14 15 16 Cb Ea Ma Yo
Star sequence

Cbr-Mir-238_5p*

mirBase accessionNone
Sequence
0- UGGGUGUCCUUGGAUGUAAAAAGC -24
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Mature sequence

Cbr-Mir-238_3p

mirBase accessionMIMAT0011465
Sequence
44- UUUGUACUCCGAUGCCAUCCACA -67
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